Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00404 ATGAGTGGAGGGCTTCTTAGGTCGCCGGAGAAAGGAGAGGGCTTTTTCTCAGTCGGAAATCGAAATTCAGTAAAGAAGCGACGCCGGAGTTTGACGGCGATGGATAGAGAGTGGGGGTCCAAGCCGGGAAGTGGAGGAGCGGCCTCTGCACAGAATGAAGCTATCGATCGGAGAGAGCGTCTTCGACGGCTTGCTCTCGAGACCATCGATCTCGCCAAGGATCCCTACTTTATGCGCAATCATCTTGGAAGTTACGAGTGTAAGCTTTGCTTGACTCTGCACAATAATGAGGGAAATTACTTGGCGCACACACAGGGGAAGCGCCATCAGACTAATTTGGCGAAGAGAGCAGCCCGTGAAGCCAAGGAGGCTCCTGCTCAACCTCAACCCCACAAGCGGAAGGTCTCTGTTCGCAAAACAGTTAAAATTGGGAGGCCTGGTTATCGTGTAACAAAGCAATTTGATTCTGAGACAAAGCAGAGATCTCTGCTTTTCCAGATTGAATACCCAGAAATTGAAGACCTAGCAAAGCCAAGACATCGGTTTATGTCCTCTTATGAGCAGCGGGTGCAACCGTTCGATAAAAGATACCAATATCTTCTGTTTGCAGCTGAACCATATGAGATAATTGCATTCAAGGTTCCAAGCACAGAGATTGACAAATCCACACCAAAATTCTTCTCTCACTGGGATCCAGACTCGAAAATGTTCACGTTGCAGTTGTATTTCAAATCCAAACCACAAGAGGCAAACAAGCCACAAACTGTGCCTGCAGCCAATGGAACGGTGCCACTGCCGCCACCACCACAAGCTCCACCACCGCCCCCACCTCCACCACAGCAAGGGGCACCACCAAGAGTTCCTCCTCCTCCGATGCCTGGATCCTTGCCGCCTCCCCCTCCTGTAATGGCAAATGGTCCTCCTAGGCCAATGCCTCCTGGTGGAGCTCCGCCCATCCCTCCACCGCCTCCAGTTGGTAATAACACAATGGCGAATTTCACTCCTGGTACTCAGATGAATAGACTTCCCATGCCACCTCCCCCACAGGGATTCCCAGGCCAGGGTGTCCGTCAGCCACCTCCACCGCCACCCAATATGGGATAG 1104 51.81 MSGGLLRSPEKGEGFFSVGNRNSVKKRRRSLTAMDREWGSKPGSGGAASAQNEAIDRRERLRRLALETIDLAKDPYFMRNHLGSYECKLCLTLHNNEGNYLAHTQGKRHQTNLAKRAAREAKEAPAQPQPHKRKVSVRKTVKIGRPGYRVTKQFDSETKQRSLLFQIEYPEIEDLAKPRHRFMSSYEQRVQPFDKRYQYLLFAAEPYEIIAFKVPSTEIDKSTPKFFSHWDPDSKMFTLQLYFKSKPQEANKPQTVPAANGTVPLPPPPQAPPPPPPPPQQGAPPRVPPPPMPGSLPPPPPVMANGPPRPMPPGGAPPIPPPPPVGNNTMANFTPGTQMNRLPMPPPPQGFPGQGVRQPPPPPPNMG 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1876633 1879568 + CmaCh06G004040.1 Cma06g00404 295958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00404 367 Pfam Zinc-finger of C2H2 type 85 109 - -
Cma06g00404 367 MobiDBLite consensus disorder prediction 248 367 - -
Cma06g00404 367 MobiDBLite consensus disorder prediction 340 367 - -
Cma06g00404 367 Gene3D Classic Zinc Finger 79 122 - -
Cma06g00404 367 ProSiteProfiles Zinc finger matrin-type profile. 85 115 IPR000690 GO:0003676|GO:0005634|GO:0008270
Cma06g00404 367 SMART ZnF_U1_5 82 116 IPR003604 GO:0003676|GO:0008270
Cma06g00404 367 Pfam Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) 143 237 IPR031781 -
Cma06g00404 367 MobiDBLite consensus disorder prediction 260 328 - -
Cma06g00404 367 Gene3D - 126 252 - -
Cma06g00404 367 SMART CactinC_cactus_3 122 249 - -
Cma06g00404 367 SUPERFAMILY beta-beta-alpha zinc fingers 81 116 IPR036236 -
Cma06g00404 367 PANTHER SPLICING FACTOR 3A SUBUNIT 2 34 361 - -
Cma06g00404 367 MobiDBLite consensus disorder prediction 1 54 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00404 Cma14g00239 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00239 Cma-Chr14:1042496 Cma06g00404 Cma-Chr6:1876633 1.77E-44 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00404 K12826 - csv:101202831 437.573