Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00414 ATGTTCAGGTTGCACAGGAACCGACAGGCGAAATCAGGGGAGAAAATTGATTTCAAGTTCTCCAACTTCAAGGCACTCCAGGTACCTAAAGGTTGGGACAAGCTATTTATATCTGTCGTCTCAGAGCAAACCGGGAAGACAATTGTCAGGTCAAGCAAAGCATCTGTTCGTAATGGAGGTTGCCAATGGACTGAATCTCTATCAGAGTCCATTTGGGTTTCACAGGACGAAATTTCAAAGGAGTTTGAAGATTGTAATTTCAAGCTTGTTGTGGCCATGGGATCAGCAAGATCTAATATTCTTGGTGAGGCTATGGTCAACATGACAAATTACATAGATTCTAAATCTTCTTCTGCTGTCTCACTTCCATTGAAAAAGTGCAATCATGGGACTAATTTACAAGTAAAAATTCAGTGCCTAACTCCAATTACAAAAGTGAGGAGGAGTGGAGAATTGAAACAGACAAATTCTTCAAAAGAAAACTTGAAGAAGGAAGGTCATGACTCAGATAGCTGCTCAGATATAACCGATAGCCAATTGTCGAGGAGTATTGGATCTTCCTCTGGTGCAGATTTATACTCTAGCTTACACTCCGGAGAGGGTAGCAGCAAGGAAGCAAGTTTCTCTGCTTCCTATTCACAACTGAGCAATGATTCATCTGAGGTTTATGAATCCGTAGAAAACGACGCTGCAAAAAACAATTATAGTGATATGCAAAGACAAGACTCCGTGAGCTCACAGAATAGTTTATCACCTAATTCTGTAATTACTGGTTCAGCGGAGGCAACGACTGTTCTGGAACTTCGTGCTGAAGCTAAGTTGTGGGAGAAAAATGCCCACAAACTGATGGCTGATCTTGATCAGTTGAAGAAAGAGTTTTCAGATCAATCCCAACACCAGGAAAGTTTAAATTCTGCACTTTCAGCAGCAAATGCAGAATGTGATGGTTTGAGAAAAGAACTTGAGCAACTGAAACTGGTGACTGAGAACTCAACACAGAGACAAACAATCATTGAGGATTTTTCATATCAAAATAATGAACCACTCATCCTAAACGAATTGAAAGATGAACTGAAGTTCCTGAAAGAAACTAATGCTGATTTAGCCGAGCAGCTAAAGAGAAGCCAAGAATCAAATATTGAGCTTGTGTCCGTCCTTCAGGAGCTAGAAGAAACTACCGAAAAGCAGAGACTGGAAATTGGGGAACTTTTGGCACGTCACAGAAAAGATAATGATATTGAAAATATTATTCAAGAAAACAAGGAATTGATGCTTCAGTTAGAACGTGTGAAAGAATCAGAGAAGAATCTTCAATTGAAGGTAGGGCTACTAGAGAGAAACTTGGAGGAAACAAATTTGAGAAACTTGGAGGAAACAAATTTTGATTTAGAGAAATGCAAGGTCTCAAACCAACGATTCCCTCAGGATATAGACAAGGAATCCGATGGTAAGCTACATTCTGAGGAGGAACTACGGTCTTTACAATCTGTAAACACAAATCTAGTGAAGGAAATTGAAATGTTGAAGGAAAAAGTGCAGGAGCTAGAAAAGGACTGTAATGAGTTGACGGATGAGAACATAGATCTCTTGTACAAGCTTAAGCAAGCAAATAACGATGCTAAGGGAGGAGGTTTGCCTTTTAACTCCTCAGGTGGTAAGCCTTTATCTAATTCCTTTGTTAATTTTGGATTCGATACAATGAAACACAAAAATTCTACACAAAATCTCGAGGTAAGTCCTGAAGGGATTGAGAATAACGATAGTTCTTTCAATCAAAAGCTAGAGAGTGCGAAATTTGAACTGGAAGTCAAAGTTGAAGAGCTCAGTAGGGAATTGACTGAGAAACAGCTGGAGATTGAAAAACTTGAATCCAGCATTTTGTCCAAAGAAGACGAGATTAAGATCCTCGGAGATTTGCATACTGAATTGCAAGCTAAGTATGCAAATCTTCAAAAAGAAAAACATGAGATCGAGGAACAGATGGAAGTCATACTTGGAGAAAGCAATATCAGCTCTAAATGCATAAATGATTTGCGAAATGAAGTAAAGGAGCTTAGAAACAGTGTGGATTTGCATGACTCTGTAAAAAGTAAATGTTCAGAGCTTGAATGTGAAAAACGAGAATTTGAACTTCATGTATCTCAGATGGAACAAGAACGCATACAGTTGTCAGAACGCATATCTGTTTTGGAATCTCAACTAAAATATATGAAAGACGAGAAGGAGTCGGTTCGCCTTGAGTTAGAGAACTCTAAGTCTCGTGCTGTGGGTCTCCAAGATGAAGTTGATAGACTGAGACTCGAGATAGAGAAGGGAAGTGTTGATCTGAAACAAATGTTGAATGATGTGCAAAACCAGTGTGCAGAGGCTCAAGATCAATGTGAGTACCTGCAAAGAGAAAAAGATTTGGTTCAGAAATCAAATGGAGAGCTGAAGAAAAAGAATTTCGAGTTACATGAGCGTTATTTACGTTTGGAATCGAAATTGAAGGAGTCACTTGAAAGGTCTGCTCATTATTCCAAAAAAGTTGATGATTTGGAGCAGTATCTCTCTCTTGGATTGGAGGATTTCGCCTCAAAAGAAAGATTACTATCTTCGGAACTAAGTTCAATCGTTGAAGACAACATAAAATACAAAGAGAAATTTGCCATGTTTGAAAGCTTGTACAATGAGACATATTTAGAGAAGGCAACTGAAGCTCAAGAACTTCAAGGAGCAGTTGTGCACCTGACCAAGCAACTTTCATCTATGAAGAATGATCTCAACATCATGCAAATGGAATCTGATGAAAAGTTAACAGCTTTGATCAATGAGCTTTCCGTGTCAAAACAAAGCCAAGGAACACTGATAGTCGACCATGAAAAGTTACTGAAGCAGTTGGAAAATTACAAATCACTCGAAGTCAAACTAAAGAACTCTGTCAATGATCTTGAATTAAAGCTTTCTGTGTCTGAAAAAGAACGAAAGCAGCATGAGGAAGAACTAACTAACTTAAAGGTAAAAATGGCCCATTTTCAGGATGAGGTTTCTGAATCGAGGAACAAGCTCGAACAAAAGATTATCGATGAATTAGAGGAGAGCAAACAGAGCGAAGTTGCCTTAAAAGAAAATGTTCTGAGAATAGGGAGTGAATCAGTAGTGAAAGAGGCATCATTTACTGGGAATGACGATTTAAGCAATGAGCTCTACCAGATTAAGAGAGTAAACAGTAAGTACCAACAGAAACCGAAAATACTGGATGAGAAAGATGAGTGCCTAAAAAGATGCCAATACCTTGAAGCAGAACTGAGACAATTAAAGGAGGAAAAACGGATCCAGCGGGAGTCTAGCAGTGTAAAGGTTCACGGTCTTTCCAAAACCAACGGCAAAAACACGAAGCTTCTAATAAATGATGCGGTAAAGACCGTTGGTCAGAATCTTAGTGGCAAGAAGAAGCCTGCTTCAAAGACCAGCCAATCACATGAACAAGTGAAAGATCGTAAGGACTTTAACAGCAATCAATCTCATTCTCAAGTTAAGGATGATAGTGAATATGATATTCCTGAAGCTGAATCTGTTTCAAGAATTCAGTTGCTCGAAAAGGAACTTGCTGAGGCTTTGGGAGCAAACAAGAAATATGAAGATCAGCTGAGCAGGCTTGTTTCAGACAATCAAAACAACAAAGAAAATTCTCCCATATCATTAGTTGAAGGTGATGCAGTGGCAAAGGAAAGATACGAAAGCATAAACTCAGCTCTCGAGGCAGAGTTAAGAGACATTCGTGAGCGGTACTTTCACATCAGCCTGAAGTACGCTGAAGTCGAGCAACAGCGTGAGGAACTTGTTATGAAGCTGAAAGCAACCAAGAGTGGGGGAAGGAGATGGTTCTCATGA 3873 39.25 MFRLHRNRQAKSGEKIDFKFSNFKALQVPKGWDKLFISVVSEQTGKTIVRSSKASVRNGGCQWTESLSESIWVSQDEISKEFEDCNFKLVVAMGSARSNILGEAMVNMTNYIDSKSSSAVSLPLKKCNHGTNLQVKIQCLTPITKVRRSGELKQTNSSKENLKKEGHDSDSCSDITDSQLSRSIGSSSGADLYSSLHSGEGSSKEASFSASYSQLSNDSSEVYESVENDAAKNNYSDMQRQDSVSSQNSLSPNSVITGSAEATTVLELRAEAKLWEKNAHKLMADLDQLKKEFSDQSQHQESLNSALSAANAECDGLRKELEQLKLVTENSTQRQTIIEDFSYQNNEPLILNELKDELKFLKETNADLAEQLKRSQESNIELVSVLQELEETTEKQRLEIGELLARHRKDNDIENIIQENKELMLQLERVKESEKNLQLKVGLLERNLEETNLRNLEETNFDLEKCKVSNQRFPQDIDKESDGKLHSEEELRSLQSVNTNLVKEIEMLKEKVQELEKDCNELTDENIDLLYKLKQANNDAKGGGLPFNSSGGKPLSNSFVNFGFDTMKHKNSTQNLEVSPEGIENNDSSFNQKLESAKFELEVKVEELSRELTEKQLEIEKLESSILSKEDEIKILGDLHTELQAKYANLQKEKHEIEEQMEVILGESNISSKCINDLRNEVKELRNSVDLHDSVKSKCSELECEKREFELHVSQMEQERIQLSERISVLESQLKYMKDEKESVRLELENSKSRAVGLQDEVDRLRLEIEKGSVDLKQMLNDVQNQCAEAQDQCEYLQREKDLVQKSNGELKKKNFELHERYLRLESKLKESLERSAHYSKKVDDLEQYLSLGLEDFASKERLLSSELSSIVEDNIKYKEKFAMFESLYNETYLEKATEAQELQGAVVHLTKQLSSMKNDLNIMQMESDEKLTALINELSVSKQSQGTLIVDHEKLLKQLENYKSLEVKLKNSVNDLELKLSVSEKERKQHEEELTNLKVKMAHFQDEVSESRNKLEQKIIDELEESKQSEVALKENVLRIGSESVVKEASFTGNDDLSNELYQIKRVNSKYQQKPKILDEKDECLKRCQYLEAELRQLKEEKRIQRESSSVKVHGLSKTNGKNTKLLINDAVKTVGQNLSGKKKPASKTSQSHEQVKDRKDFNSNQSHSQVKDDSEYDIPEAESVSRIQLLEKELAEALGANKKYEDQLSRLVSDNQNNKENSPISLVEGDAVAKERYESINSALEAELRDIRERYFHISLKYAEVEQQREELVMKLKATKSGGRRWFS 1290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1917891 1923829 - CmaCh06G004140.1 Cma06g00414 295968

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00414 1290 Coils Coil 413 454 - -
Cma06g00414 1290 Coils Coil 1082 1109 - -
Cma06g00414 1290 MobiDBLite consensus disorder prediction 1148 1180 - -
Cma06g00414 1290 Coils Coil 591 667 - -
Cma06g00414 1290 Coils Coil 265 292 - -
Cma06g00414 1290 Coils Coil 1236 1256 - -
Cma06g00414 1290 Coils Coil 1189 1223 - -
Cma06g00414 1290 Coils Coil 960 1015 - -
Cma06g00414 1290 Coils Coil 699 768 - -
Cma06g00414 1290 Coils Coil 351 406 - -
Cma06g00414 1290 MobiDBLite consensus disorder prediction 150 183 - -
Cma06g00414 1290 MobiDBLite consensus disorder prediction 1138 1180 - -
Cma06g00414 1290 Coils Coil 300 327 - -
Cma06g00414 1290 Coils Coil 491 539 - -
Cma06g00414 1290 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 917 1019 - -
Cma06g00414 1290 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 1 919 - -
Cma06g00414 1290 PANTHER HEAVY CHAIN-LIKE PROTEIN, PUTATIVE-RELATED 1018 1290 - -
Cma06g00414 1290 Coils Coil 900 920 - -
Cma06g00414 1290 Coils Coil 773 807 - -
Cma06g00414 1290 ProSiteProfiles C2 NT-type domain profile. 6 141 IPR019448 -
Cma06g00414 1290 Coils Coil 675 695 - -
Cma06g00414 1290 MobiDBLite consensus disorder prediction 152 172 - -
Cma06g00414 1290 PANTHER PROTEIN MLP1-LIKE 1 919 - -
Cma06g00414 1290 PANTHER PROTEIN MLP1-LIKE 1018 1290 - -
Cma06g00414 1290 PANTHER PROTEIN MLP1-LIKE 917 1019 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00414 - - - csv:101220815 1789.24
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01064 Cma06g00414 CCT
Cma06g00414 Cma15g01215 CCT
Cma02g01064 Cma06g00414 ECH
Cma06g00414 Cma15g01215 ECH
Cma06g00414 Cma16g00588 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00414 Cma-Chr6:1917891 Cma15g00731 Cma-Chr15:3536913 1.35E-32 dispersed
Cma14g00247 Cma-Chr14:1075607 Cma06g00414 Cma-Chr6:1917891 1.83E-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g345 Blo02g01105 Blo03g00203 Bda06g00083 . Bpe05g00637 Bpe07g00115 . Bma14g00613 . Cmo16g00637 Cma02g01064 Cma15g01215 Car02g00807 Car15g01096 . Cpe14g00498 Cpe05g00319 . . . . . . . Cla07g00764 Cam07g0819 Cec07g0878 Cco07g0854 Clacu07g0797 Cmu07g0804 Cre07g1159 Cone8ag0317 Cone12ag0316 . Cone9ag0766 . Csa05g00299 Chy09g01206 . . . . . . . Bma05g00813 Bma12g00090 . Cmo02g01506 Cmo15g01279 Cma06g00414 Cma16g00588 . . . Cpe13g00164 Bhi12g00228 . . . . . . Cla01g00281 Cam01g0291 Cec01g0284 Cco01g0297 Clacu01g0290 Cmu01g0277 Cre09g2230 Lsi09g00280 . . Cme09g01743
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003884 1 1 1 1 1 2 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 2 2 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00414 Cma_Chr06 FPKM 12.184123 12.809343 9.146433 10.845174 5.766711 5.491757 5.78024 2.021908 1.65865 1.894743