Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00415 ATGGTCGGAAAGGAAGATCCGCCGATGGGGAAAGAATCCGCCAACACCGTTGCCGGAAGCGAGAATCATAAAACAGCGAGGCTAGCCATACTAGAGCTCGCAAACATGATCAGCGTTCCGATGTCCCTCAATGCCGTCGTCCGTCTCAAAATCGCCGACGCTATCTGGCAAGGAGGTTCCAATTTTCCGCTCTCTGCTTCTGAGATCCTCGCACGCTTGGTTCCATCCGGTGGCGACGCCGATAATCTCGAGCGGATCCTCCGTATGCTCACTAGCTATGGCGTTTTCGAAGAGCATCTCAACCCTAACTCGTCGGACCGCCGGTATTCCCTCACCGACGTAGGAAAAACTCTGGTCACCGATTCCGATGGTCTCTCTTACGCGTCGTACGTGCTTCAGCATCATCAGGACGCGCTTATGAGAGCGTGGCCAAGAGTGCACGAGGCTGCGATTGACGCTACTACGGAGCCGTTTGTCAGAGCTAATGGCGAAGCAGCGTACAGTTACTACGGGAAGAATGAGGAGATGAACTTGTTAATGCAGAGAGCGATGGCCGGCGTATCAGTGCCGTTCATGAAGGCTGTATTGGACGGCTACGATGGCTTCGGAGGCGTGGAGAAATTGGTCGACGTCGGCGGCAGCGCCGGTGATTGCTTGAGGATGATCCTACAGAAACATCCTCACATTAAGGAAGGAATCAACTTCGATCTGCCGGAAGTGGTGGCTAGGGCTCCCAGCATCCCCGGGGTGACTCACGTTGGAGGCGACATGTTCAAGTCCGTCCCCACCGGTGACGCTATTTTCATGAAGTGGGTTCTGTCAACATGGACGGATGATGAATGCAAGATGATATTGGAGAACTGCTGCAAGTCACTCCCGGCGGGAGGGAAACTGATCGCCTGCGAGCCGACGGTGCCTGAGAAGACGGACGACAGTCACCGGACACGTGCCCTTTTAGCCAACGACATATTCATCATGACCATTTACAGTGCGAAGAGTAAGCAGAGGACTGAGGATGAGTTCCGGCAGCTGGGCCTCTCCGTCGGCTTCTCCGGCATGCGCTCATTCCACGTGGATTACTTCTATTGTGTGTTGGAATTCCAGAAGTGA 1110 54.41 MVGKEDPPMGKESANTVAGSENHKTARLAILELANMISVPMSLNAVVRLKIADAIWQGGSNFPLSASEILARLVPSGGDADNLERILRMLTSYGVFEEHLNPNSSDRRYSLTDVGKTLVTDSDGLSYASYVLQHHQDALMRAWPRVHEAAIDATTEPFVRANGEAAYSYYGKNEEMNLLMQRAMAGVSVPFMKAVLDGYDGFGGVEKLVDVGGSAGDCLRMILQKHPHIKEGINFDLPEVVARAPSIPGVTHVGGDMFKSVPTGDAIFMKWVLSTWTDDECKMILENCCKSLPAGGKLIACEPTVPEKTDDSHRTRALLANDIFIMTIYSAKSKQRTEDEFRQLGLSVGFSGMRSFHVDYFYCVLEFQK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1924548 1927568 - CmaCh06G004150.1 Cma06g00415 295969
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00415 369 Gene3D Vaccinia Virus protein VP39 124 369 IPR029063 -
Cma06g00415 369 MobiDBLite consensus disorder prediction 1 20 - -
Cma06g00415 369 Pfam O-methyltransferase domain 149 351 IPR001077 GO:0008171
Cma06g00415 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 367 IPR029063 -
Cma06g00415 369 SUPERFAMILY Winged helix DNA-binding domain 22 121 IPR036390 -
Cma06g00415 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 31 369 IPR016461 GO:0008168
Cma06g00415 369 Gene3D - 12 123 IPR036388 -
Cma06g00415 369 PANTHER OS02G0823400 PROTEIN 19 368 - -
Cma06g00415 369 PIRSF O-mtase 9 369 IPR016461 GO:0008168
Cma06g00415 369 PANTHER O-METHYLTRANSFERASE 19 368 IPR016461 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00415 Cma-Chr6:1924548 Cma18g01342 Cma-Chr18:10209866 9.13E-80 dispersed
Cma06g00415 Cma-Chr6:1924548 Cma11g01356 Cma-Chr11:8975412 1.47E-45 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00415 - - csv:101205175 649.818