Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00421 ATGGACAGCGCCGTATTGTCTCTAATTTCATCTGATAACCCCGGGATCGATTATCCTTCCGACCGATGTTCAAGTTTTGTATTGAAACCTCTGAGTGATTTTGTATCTATTTTCAGGGGATCTCAGGAAGAACAGGTACGTCCTCCTCAAGATGTTATCACACAATCATGGTATCCACCTTCTGTTAGCTCCTCTCGCCCTGGAACCCCAGGTAGCACCTCCTCCAGGCCACAATCTCCATCACACGTTTCACCGTCTGAAGCTGCTGGCATTATTTCTGCTTTGAAGGACAAAAGTGTTGATGAGTTACGAAAGCTATTGTCGGATAAGGATGCATATAATCAATTCCTCCTTTCACTCGACCAGATTAAAATTCAGAACAACCTAAGAGATGAGCTGCGCGAGGAAACTCTTCAGCTTGCAAGTGAGAACATGGAAAAGGAACCACGCATCATGGAACTTAGAAACCAGGTATGGGTTTATCAGAAAATTAGTTATTTCTCTTGCTTGTTGAATTCACTCGCCCTCCTGTTCATTCTCCCACAGTGCAGAATAATCCGGACAACTGAACTGGCTGCTGCCGAGGAGAAGCTGAACGAGCTTGACCGAAAGAAAAAGGAGATCTTGAACCACTGTTCTCCTGCTTCACTTATCCGAAGGCTTCAAGAGAGAATGAAGGAGACTGAAGAGGAGTCGGACAATCTGCACAGACAGCTCCTTGACAGAGAGATAGATTTGGGTTCTTTTACTCACAAATACAAGAAGCTGCGTATGGATTACCTCCGGCGAGCTCTCATTCAACTTTCTGCTACCACCACCTGA 822 45.26 MDSAVLSLISSDNPGIDYPSDRCSSFVLKPLSDFVSIFRGSQEEQVRPPQDVITQSWYPPSVSSSRPGTPGSTSSRPQSPSHVSPSEAAGIISALKDKSVDELRKLLSDKDAYNQFLLSLDQIKIQNNLRDELREETLQLASENMEKEPRIMELRNQVWVYQKISYFSCLLNSLALLFILPQCRIIRTTELAAAEEKLNELDRKKKEILNHCSPASLIRRLQERMKETEEESDNLHRQLLDREIDLGSFTHKYKKLRMDYLRRALIQLSATTT 273
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1945861 1951094 + CmaCh06G004210.1 Cma06g00421 295975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00421 273 Pfam Modifier of rudimentary (Mod(r)) protein 188 264 IPR009851 -
Cma06g00421 273 Pfam Modifier of rudimentary (Mod(r)) protein 96 158 IPR009851 -
Cma06g00421 273 Coils Coil 218 238 - -
Cma06g00421 273 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 182 272 - -
Cma06g00421 273 Coils Coil 126 146 - -
Cma06g00421 273 Coils Coil 191 211 - -
Cma06g00421 273 ProSiteProfiles VPS37 C-terminal domain profile. 195 273 IPR009851 -
Cma06g00421 273 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A 182 272 - -
Cma06g00421 273 Gene3D Helix hairpin bin 198 268 IPR029012 -
Cma06g00421 273 PANTHER WILLIAMS-BEUREN SYNDROME CRITICAL REGION PROTEIN-RELATED 42 158 - -
Cma06g00421 273 MobiDBLite consensus disorder prediction 47 86 - -
Cma06g00421 273 MobiDBLite consensus disorder prediction 41 86 - -
Cma06g00421 273 SUPERFAMILY Endosomal sorting complex assembly domain 209 260 IPR037202 -
Cma06g00421 273 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 37A 42 158 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00421 Cma14g00250 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00250 Cma-Chr14:1090696 Cma06g00421 Cma-Chr6:1945861 1.52E-127 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00421 K12185 - csv:101204280 301.212