Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00425 ATGCGGGCCCTCACTTCCTTGATCTTCGCTTTAGTATCCGTCGTTTTGTCGGCGACGGTGGTCTACTCCGGCTTCCCCCTCCAACGTCTCTCTCTGCAGAGAGCCTTCCCTTCATCTCACTCTATCGAACTTGAAACTCTCCGAGCTCGGGACCGTCTCAGGCATGCCAGAATCTTGCAAGATGTCGTCAGTGGCGTCGTCGACTTCTCAGTCGAAGGTTCTTCCGATCCGTTGCTCGTCGGGCTTTACTTTACCAAAGTTAAATTGGGCACTCCCCCAAAGGAATTTACGGTGCAGATCGACACTGGAAGCGATATATTGTGGGTGAACTGTAATTCCTGCAATGGTTGCCCCAGAGCAAGTGGACTTGGAATTCAACTAAATTTCTTTGATGCTTCCAACTCATCAAGTTCTTCACTGGTTTCCTGCTCTGATCCAATATGCAATTCTGCATTCCAAACAACTGCGACTCAGTGTTTATCTCAGACTAATCAATGTAGTTACACCTTTCAGTATGGTGATGGAAGTGGAACATCGGGTTATTATGTATCTGAGTCCATGTACTTTGACATGGTTATGGGGCCTACTATGATTGCTAACTCTTCAGCTACAGTTGTTTTTGGTTGCAGCACATATCAGTCAGGTGACTTGACTAAATCAGACCATGCAATAGATGGCATTTTTGGATTTGGCCCCGGGGATTTGTCTGTCATATCACAGTTATCAGCTCGAGGGATAACCCCGAAAGTATTTTCCCATTGTTTAAAAGGAGAAGGAAATGGAGGTGGTATATTGGTTCTTGGAGAGGTTCTGGAGCCCGGCATTGTGTATAGCCCACTCGTGCCCTCTCAGCCTCACTATAACTTGTATCTGCAAAGCATTGCTGTCAATGGTCAGGCGCTGCCAATTGATCCATCTGTGTTCGCAACATCAAATAATCGAGGAACTATTATAGACTCTGGGACAACATTGGCTTATCTTGTGGAAGAAGCTTATACGCCATTTGTCAGCGCGATAACTGCTGCTGTTTCCCAATCTGTGACTCCTACTATTTCAAAGGGCAGCCAGTGTTATCTAGTATCCACCAGTGTAGACGAGATATTTCCCATGGTTAGCTTAAATTTTGCGGCCGGTGCATCTATGGTGTTAAGACCCGAAGAATACCTTATGCATCTTGGCTTTTATGATGGTGCTGCATTATGGTGTATTGGTTTTCAGAAAGTTCAGGAAGGAGCAACAATTTTAGGAGATCTTGTTATGAAAGATAAGATATTCGTATATGATTTGGCACGCCAGCAAATCGGGTGGGCAAACTATGATTGTTCTCAAGCTGTAAATGTATCGGTCACGTCCGAGAAGAACGAGTTCGTCAACGCAGGACAGCTGAGCGTGAGCGGCTCAACCCAAGATAAGCTCCTTCAATCACTAGCTATAGAAGCATTAGCTCTTTTTCTGAGTTTCATTTTGTTCATCCACTTCCAGTTTCTGTAA 1491 45.07 MRALTSLIFALVSVVLSATVVYSGFPLQRLSLQRAFPSSHSIELETLRARDRLRHARILQDVVSGVVDFSVEGSSDPLLVGLYFTKVKLGTPPKEFTVQIDTGSDILWVNCNSCNGCPRASGLGIQLNFFDASNSSSSSLVSCSDPICNSAFQTTATQCLSQTNQCSYTFQYGDGSGTSGYYVSESMYFDMVMGPTMIANSSATVVFGCSTYQSGDLTKSDHAIDGIFGFGPGDLSVISQLSARGITPKVFSHCLKGEGNGGGILVLGEVLEPGIVYSPLVPSQPHYNLYLQSIAVNGQALPIDPSVFATSNNRGTIIDSGTTLAYLVEEAYTPFVSAITAAVSQSVTPTISKGSQCYLVSTSVDEIFPMVSLNFAAGASMVLRPEEYLMHLGFYDGAALWCIGFQKVQEGATILGDLVMKDKIFVYDLARQQIGWANYDCSQAVNVSVTSEKNEFVNAGQLSVSGSTQDKLLQSLAIEALALFLSFILFIHFQFL 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1954931 1959683 + CmaCh06G004250.1 Cma06g00425 295979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00425 496 SUPERFAMILY Acid proteases 79 445 IPR021109 -
Cma06g00425 496 Pfam Xylanase inhibitor C-terminal 286 437 IPR032799 -
Cma06g00425 496 PRINTS Pepsin (A1) aspartic protease family signature 89 109 IPR001461 GO:0004190|GO:0006508
Cma06g00425 496 PRINTS Pepsin (A1) aspartic protease family signature 316 327 IPR001461 GO:0004190|GO:0006508
Cma06g00425 496 PRINTS Pepsin (A1) aspartic protease family signature 413 428 IPR001461 GO:0004190|GO:0006508
Cma06g00425 496 CDD pepsin_A_like_plant 83 441 IPR034161 -
Cma06g00425 496 Gene3D Acid Proteases 270 448 IPR021109 -
Cma06g00425 496 ProSiteProfiles Peptidase family A1 domain profile. 83 437 IPR033121 -
Cma06g00425 496 PANTHER ASPARTYL PROTEASES 5 459 IPR001461 GO:0004190|GO:0006508
Cma06g00425 496 PANTHER EUKARYOTIC ASPARTYL PROTEASE FAMILY PROTEIN 5 459 - -
Cma06g00425 496 Pfam Xylanase inhibitor N-terminal 83 268 IPR032861 -
Cma06g00425 496 Gene3D Acid Proteases 67 269 IPR021109 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00425 Cma07g00884 CCT
Cma06g00425 Cma07g00884 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00425 Cma-Chr6:1954931 Cma08g00078 Cma-Chr8:406155 2.12E-99 dispersed
Cma14g00253 Cma-Chr14:1102157 Cma06g00425 Cma-Chr6:1954931 0 wgd
Cma02g01366 Cma-Chr2:7970258 Cma06g00425 Cma-Chr6:1954931 0 wgd
Cma20g00538 Cma-Chr20:2593032 Cma06g00425 Cma-Chr6:1954931 0 wgd
Cma06g00425 Cma-Chr6:1954931 Cma07g00884 Cma-Chr7:4171047 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00425 - - cmos:111438716 888.641