Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00427 ATGGTAACTATGAAGATCCCAACACCATGCTTGTTTGGAAGCTACCTTTTTTTTCTTCTGTTTTTTAGTCTCTGCTGCTATTCGCAGAAAACGTGCCCGAGCTGCGGCTCCATTGATGTTCCTTATCCTCTTAGTACCAATTCAAACTGTGGTGACTTAGACTATACTCTCCGCTGTGATTCTCATTCACAGAGACTCTACTTTGATGCACTTAATGGAAGTTCATATCCTGTCCTGAAAATCAATGGTTCGAGTCAACGTTTGGTGATCCAACCATCTCCATGGGTTCCTGACTCCTGTGTTACTCAAGACATGTTGGTCAGTGAAGGCCTGTGGTTAAACCAATCACTCCCTTTTAACATCACTTCATCCAATACAATTTTCCTCTTGAACTGTTCTCCTCGACTGCTCGTCTCACCACTCAATTGTACTCCATCTAGTATCTGTCATCACTACTTGGAACGTTCTGGACGTGTTGATGGAAAACGAGCATTTCAGTGTGCTAGTGTTCTTGACCCTTGTTGTACCTTCATCGCTGGTGGGATGCCCTCAGCGTATAAGATAAGACTTCATAACTCAGGCTGTAGAGCATTCAGGAGCATCCTTCATCTAGATGTAGAAAAGCCTGCAAATCAATGGGAGGAAGGTTTGGAAATTCAATGGGCTGCCCCACCTGAACCAATCTGTAGAACTCAATCTGATTGCACTGGAGCGTCGGATTGTCATCCTACTGGCAGCTCCAACAGCCGATCTCATTGCCTTTGTAGAACGAGCTACCATTGGGATCATATCCTCGGAACATGCCTGAGAACAAATAGGAAGAGCATGGTCGGACTGAGTACAAAGCTCTTGGTATGTCTTGTTTCATTTTTCGTTCTAGCTGCGATTATCGCTCTAATTACTGTCAGGAAGTCCAGAACATTCAGTAAGCAGGAAAAGCTGTGTAAAGAAAGAGAAGATATGTTGAATTTTAGAAATGGGGGCAGACCAGCCAGAATGTTTCATCTGAAAGAGATGATGAAAGCAACGAATAAGTTTTCAAAAGATAGGGTCCTAGGATACGGTGGCTTCGGAGAGGTTTACAAAGGTGAACTTCAAGACCGGACCATTGTCGCCGTGAAGTCAGCTAAAGTGGGCAATCTAAAGAGTACCGAGCAGATACTCAACGAAGTCGGAATACTGTCTCAAGTAAACCACAAGAATCTTGTGAAACTTATAGGGTGCTGTGTAGAAACAGAGCAACCATTAATGATATATGAATACATTTCCAATGGCACCCTCCATGACCATTTACATGGTAAGTTTCCCACTTTCTTGGACTGGAGAAAAAGGCTAAAAGTTGCTTCACAAACTGCTGAAGCATTAGCTTACCTTCATTCAGCTGCATACCCTCCCATCTATCATAGAGATGTCAAGTCAACAAATATACTCTTAGATGATAACTTCAATGCCAAAGTTGCTGATTTTGGGCTTTCAAGATTGGCTTTGCCAGGAATAAGCCATGTTTCGACTTGTGCTCAGGGTACGTTAGGTTACCTAGACCCGGAATACTATCAGAATTACCAGTTAACAGATAAAAGTGATGTGTATAGTTTCGGAGTTGTCCTGCTCGAGCTTTTAACCTCTCAGAAGGCCATAGATTTCACGAGAGATGAAGATAGTGTCAATCTAGCAGTCTATGTGATCCAACGAGTGCACAACGGTGCGTTCATCGACACTGTCGATAAACAGCTTCTGAGTGACGATCCATCGAGCAATACACTGATTAGTGTGAAGCACGTGTTGGAGCTCTCACTCACGTGTTTGAGGGAGAAGAAAGCAGAAAGGCCTTCCATGAAGGATGTAGTCCAAGAACTTGAGTACATAGCTCAAATATTGGAGAGTCCAGAAACAGTTGGTGAAGAAGAAGAAGGGCAATCTTACAAAGGGTTAGAAGTTTAA 1941 43.12 MVTMKIPTPCLFGSYLFFLLFFSLCCYSQKTCPSCGSIDVPYPLSTNSNCGDLDYTLRCDSHSQRLYFDALNGSSYPVLKINGSSQRLVIQPSPWVPDSCVTQDMLVSEGLWLNQSLPFNITSSNTIFLLNCSPRLLVSPLNCTPSSICHHYLERSGRVDGKRAFQCASVLDPCCTFIAGGMPSAYKIRLHNSGCRAFRSILHLDVEKPANQWEEGLEIQWAAPPEPICRTQSDCTGASDCHPTGSSNSRSHCLCRTSYHWDHILGTCLRTNRKSMVGLSTKLLVCLVSFFVLAAIIALITVRKSRTFSKQEKLCKEREDMLNFRNGGRPARMFHLKEMMKATNKFSKDRVLGYGGFGEVYKGELQDRTIVAVKSAKVGNLKSTEQILNEVGILSQVNHKNLVKLIGCCVETEQPLMIYEYISNGTLHDHLHGKFPTFLDWRKRLKVASQTAEALAYLHSAAYPPIYHRDVKSTNILLDDNFNAKVADFGLSRLALPGISHVSTCAQGTLGYLDPEYYQNYQLTDKSDVYSFGVVLLELLTSQKAIDFTRDEDSVNLAVYVIQRVHNGAFIDTVDKQLLSDDPSSNTLISVKHVLELSLTCLREKKAERPSMKDVVQELEYIAQILESPETVGEEEEGQSYKGLEV 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1967253 1969193 - CmaCh06G004270.1 Cma06g00427 295981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00427 646 ProSitePatterns Serine/Threonine protein kinases active-site signature. 466 478 IPR008271 GO:0004672|GO:0006468
Cma06g00427 646 Pfam Wall-associated receptor kinase galacturonan-binding 32 90 IPR025287 GO:0030247
Cma06g00427 646 ProSiteProfiles Protein kinase domain profile. 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00427 646 SMART serkin_6 346 622 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00427 646 Pfam Protein tyrosine and serine/threonine kinase 348 619 IPR001245 GO:0004672|GO:0006468
Cma06g00427 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 23 632 IPR045274 GO:0007166
Cma06g00427 646 SUPERFAMILY Protein kinase-like (PK-like) 326 621 IPR011009 -
Cma06g00427 646 Gene3D Transferase(Phosphotransferase) domain 1 422 639 - -
Cma06g00427 646 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 23 632 - -
Cma06g00427 646 Gene3D Phosphorylase Kinase; domain 1 305 421 - -
Cma06g00427 646 ProSitePatterns Protein kinases ATP-binding region signature. 352 374 IPR017441 GO:0005524
Cma06g00427 646 CDD STKc_IRAK 352 620 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01017 Cma-Chr3:7079778 Cma06g00427 Cma-Chr6:1967253 7.11E-87 dispersed
Cma05g01089 Cma-Chr5:8587442 Cma06g00427 Cma-Chr6:1967253 2.75E-38 dispersed
Cma06g00427 Cma-Chr6:1967253 Cma07g01010 Cma-Chr7:5236317 1.36E-180 dispersed
Cma06g00427 Cma-Chr6:1967253 Cma15g00109 Cma-Chr15:493811 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68630 PF07714 PK_Tyr_Ser-Thr 6.80E-49 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00427 - - cmos:111450783 1267.68