Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00429 ATGGACAAAGCTTCCAAGCATCAGGTATCATTGAGGGGAGCGAGTGCAAAAGAAATTACGAGGGATGCTCTAGTTCAGAAGGTTATCCAGGAGAGAGAGCTACGTCAATATGCAAGAAAAGCTGCAGCTGCGGCTCTCTTTATTCAGAGAGTATGGAAGCGCTACAGAGTGACTAAGATAGCTGCTTTGCAGCTTCAAAAAAGTTGGGAGGAGTTGGTGAATAATCGTTCTGGTGCTCTGGCTGGCACGTTCATTTCCTATAATATTTTGAGACCGTTTCTCTTCTTTATCTCATCTTTTCTAAAACGACCCCAAAATATCCAGACCAGAGATATAGACTGTATGAAGAATTGCTTTACAATCTTGTTTGAAAGCATCAATTCTACCGAATCAAAGAACAACTTTTGCTCCTTGGCCACTGGTACATCTGAAGAAAGAAGAATATGGACTTACCAATCAAGGAAACTTATTTCTGTATGCTTATTTATTCTTGTTCATTTCGACAAGTTGCAAGCAAAGGAGCAAGAAATTATTGTTACAACCTCATTAGCCATGCGCTTGGTAGTTGTCTTCACTGATTATAATGGGTGGAAGAATGTAAATGAGAATAATCGTTTTGATACAGAAGCAGCATTGAAGGATTTAGTTCATTATCTAGGAACTTCTGAAAGTGGTCTTTACCTATCCGTCAGAAAATACATGTGTAAATTGAGTGTTATACAATCTTCATGGACCACCAGTACCATCCAGACAAATGATTTATTTGTTATTACTGTGAGTGCAATAACTTTAGCTTTACGACCATTTCATCTAATGAATTTTGATGCAATTGGCACTACTTCGTGGGAAGGGCATCATGTGGCTGAACAGTTCTGTTTGTTTCTACTTACAATTCCCGAACTTGTTCAAAATCTGCCTCAAGTTCTTGTGCCAGCTGTAAAGCATCGATCTATCTTGCTACCATGCTTCTGGACTCTATTGGCCAAGAAAGAGACAATTTTATTGGGAATGTCTGACCTGGATCGGTTATCAGTTGATTGTGGCTCTAAGGTTGTTCCGGCAGTTGGATGGGCTCTTGCAAACATTATATGTCTGGCAGCAGGGACTGAAACTAAGGCCAGGGATTCTGGTTGGTTCAAGCAGAGTTTAGATTATGTGTTATATGTTCGTGTGGGTATCACTTTGGCAGAAAGACTTTTGGCTTTGATTGGGGATTTTGGGTGTGGTAGAAAGGAGAATCAAGATATCCAAAGTGAAAATTTAACTTCTTATGAACCCTCTGATGCAGCTGTTCTCAAGAATGAAATGGCATCCATGCCCTTAAGCACATTGCCCATTGATATGTTTAGGCCTATTTGTGAACAGAGGCATCTCACCGATCTTTTGACAATAGTAAATACAGATCTTCACTCCGAAAAAAGTACTGCACAGTCAAATAATATAGACTGTATGAAAAGCTTGAAACTGATCGATATATCATACTTTTACATGTACATGCTCAGATTATTTTCACTTTTGAATCCACCAGTTGGATCCTTACCTGTTCTTAACATGTTATCTTTTACTCCTGGGTTTCTTGTTGATTTGTGGGGAGTTTTAGAAAGTTCCCTTTTCCCCAGTGATGCCGATGAAGCTGAAGGTCCCTTTCCTGGCTCAAGTAAAATATCAAGTAAAAAGAAAGATGAAGTTTTTGGCAAAAAGCCAAAGCAAGTCAACAGGGATGGAAATAGTAAGAGGGTAACTGTCTTTCATAAGTTCACGAGCAAGTCACAACTGGGCAGTGATCATATGGACTCAGTTAAGGTTCAATCTAGTTCAAGACAAGGGGATGATGACTTGCGTGATTTATGGGACATAAAATCTCTGAGATGTGGTCCACAAGGTATTTCAAAAGATTTGTCATGTCTGCTCTATCTTTTCAGTGCCACTTATGCTCATCTGCTGTTAGTTCTAGACGACATAGAGTTCTATGAAAAACAGGCAAGATATTTCATCTCTCCCTCCATTGTTCCGTTCAGGCTGGAGCAGCAAAGGAAACTTGCATCAATGCTTAATACACTTGTGTATAATGGCTTGTCCCATGGTACTGGTCAGCAGAACACATCCCTTATGGAATCTGCAATCAGGTGCTTGCATCTGATGTATGAGAGAGATTGCAGACACCAGTTTTGTCCTCCTATGCTATGGCTTGCACCTGCTAGAACAAGTAGACCACCTGTTGCAGTTGCTGCAAGAACTCACGAAGCTTTATTAGCTAACTTACGGGCAGATGATAGTTTAACAGTTCCAACTGTAGGTTCGATTATAGCTACCACACCGCATGTGTTCCCATTTGAGGAAAGAGTTGAAATGTTCAGAGAGTTTGTCAAGATGGACAAAGTCTCCCGAAAAATGGCAGGTGAAGTTGGTGGACCTGGGTCACGATCATTTGAAATTGTAGTTCGTCGCAGCCATGTTATTGAAGATGGATTCAGACAGTTAAATTCCCTTGGGTCAAGGCTAAAATCAGCTATTCATGTTTCATTCGTTAGTGAATGTGGCCTTCCCGAGGCTGGCCAAGACTGTGGTGGATTATCCAAAGAGTTTTTAACTGATATAGCCAAAGCAGCATTTTCTCCTGAATATGGGCTGTTCTGTCAAACGTCTACTGAAGATAGGCTTCTTATCCCTAATGCATCAGCAAGATATCTCGACAATGGCATCCAGATGATCGAGTTTCTTGGTAGAGTTGTTGGGAAGGCTCTCTATGAAGGAATATTGCTTGATTACTCATTTTCGCATGTTTTTGTTCACAAGTTGTTAGGCCGGTATAGCTTCCTTGACGAGTTATCGACACTTGATCCAGAACTATACCGGAATCTCATGTATGTCAAGTCTTATGAGGGCGATGTCAAAGAACTCTCGCTGGATTTCACTGTTACTGAAGAATCATTTGGCAAGCGACATGTTATTGAGCTTATACATGGTGGCAAGGATGTTTCTGTTACAAATGAGAATAAGATGCAGTATGTTCACGCCATTGCTGATTATAAACTTAATCGACAGATACTGCCTTTTTCAAACGCATTCTATAGGGGTTTGACTGATCTTGTATCACCGTCGTGGTTGAAGTTATTTAGTGCAAGTGAATTCAATCAGTTGCTTTCTGGTGGAAACCACGACATTGACGTTGATGATTTGAGGAATAATACACGATATACAGGTGGTTACACAGAGGGCAGCCGAACTATTAGTATTTTCTGGGAGGTTATTAAGGGGTTTGAACCAAAAGATCGTTGTTTGCTTCTTAAATTTGTCACTAGTTGTTCTCGAGCTCCATTACTTGGATTCAAGTACCTGCAACCAGCTTTTACCATTCATAAGGTCTCATGTGACGTTCCGATATGGGCTTCACTTGGAGGACAGGATGTCGAGCGCCTTCCGACAGCTTCCACTTGCTATAATACTCTCAAGGTCTGTGGCACATCAAAGGCCGCTGGTTCGTTCTTTGATCTCATCCATCTCAGGCCACGCCACAGTCTCACCCTGCTGGAAGGAAACATCAGCCTCCATTTTGAGCTATTCTTGACAGCTTTTGTAGAAACAACGTATGAGATTAGATTTATCCATGACAAACTTCAGCCTCAACTCTTCATCCATTTTCAAACCTCATATCGAGCCGAGACGAGCAACGATGTCAGAAATTTGAGTCTCTCCAACCTACAATTGAGACAAGACATCGAACTGAATCGAACCAAATTTCTAATGGCAAACACAACTTCAAAACTCGAGAATTCCGAGCAGACACTCTTGAAAATTGGCATTCCTCTAGCTCTATCAGCAGCTGGTGGAGTATGTTGTGGCATAATGATGGCAAGAAGTTCATTTCCCTCCTTAAATCCATTCAAACGCATATCACAACTCGTTAAAAATGAGAGCTTTGACAGCCAAAATCACTCAGCTCCACTTCCTTTGAAGCAAAAAGAAACTTCACCCAATATTGAGGAAGTTCTTTTAGGCTTAAAAAACAGAGTTGAAGATCTTGAAAGAAAGGAATTGGGTATTGAAAAGCAGTTCATTTGGTACCAAAATTTGAAAGAGAAGGAAGCTTTGCTGATGGAGTTGAAGAACACCTTGGTTTTGGACATGGCTCATATCAGGTTCTTGGAGAAGGAGATTTTGCTAATGGAAGAAGAAAACAAAAGGTTTGAGAGTTTGGTGACTGAATATTTGGGAGTTTCAGAGCAGTTTGAAGGCCAAAAACCAGAAAACAGGTTACTTGAGAGAGAAGTAAAGAAACTGAAGAAGAGATTGAAGGACCAATCAAAGATGATAAGAGAGAAGAATTTGAAGATTGAAGAGAGTAGAACAGAGTTTTGGAGAAACAATGAAGAAATGGAAAGGAAGAAGAGGATGATTGAGAAATTGAGGAATGAACTAAGAGAGCTCAAAATGCAAATGGAGAACAATGCTTCATCTTCATCACCATTTAAGATTGAAGAAGAAAAAGAAGTGACAATGAAGGATGTTAGCAAGCTTTCAATTGGAAACCATGAACAAGAACAGAAAGAAAACCACAAGGATTTGGATCAAAAGGAATCCTCTCCTGATAAAACTACAAGACCAAAGCTCACGGAGGATGTCAACAAGCTTTCGATTGGAAACCATGAACAAGAACAAGAAGAACAGAAAGAAAATCACAAGGATTTGGCTCAAAAGGAATCTTCTCCTGATAAAACTAAATATACAAGGCCAAGGCTTCTTCGAAGGATAAGCGATTCTGGGAGTAGTGAAATGAATACAAAGATGAAGAAAAAAATTAGACCACAATAA 4812 40.15 MDKASKHQVSLRGASAKEITRDALVQKVIQERELRQYARKAAAAALFIQRVWKRYRVTKIAALQLQKSWEELVNNRSGALAGTFISYNILRPFLFFISSFLKRPQNIQTRDIDCMKNCFTILFESINSTESKNNFCSLATGTSEERRIWTYQSRKLISVCLFILVHFDKLQAKEQEIIVTTSLAMRLVVVFTDYNGWKNVNENNRFDTEAALKDLVHYLGTSESGLYLSVRKYMCKLSVIQSSWTTSTIQTNDLFVITVSAITLALRPFHLMNFDAIGTTSWEGHHVAEQFCLFLLTIPELVQNLPQVLVPAVKHRSILLPCFWTLLAKKETILLGMSDLDRLSVDCGSKVVPAVGWALANIICLAAGTETKARDSGWFKQSLDYVLYVRVGITLAERLLALIGDFGCGRKENQDIQSENLTSYEPSDAAVLKNEMASMPLSTLPIDMFRPICEQRHLTDLLTIVNTDLHSEKSTAQSNNIDCMKSLKLIDISYFYMYMLRLFSLLNPPVGSLPVLNMLSFTPGFLVDLWGVLESSLFPSDADEAEGPFPGSSKISSKKKDEVFGKKPKQVNRDGNSKRVTVFHKFTSKSQLGSDHMDSVKVQSSSRQGDDDLRDLWDIKSLRCGPQGISKDLSCLLYLFSATYAHLLLVLDDIEFYEKQARYFISPSIVPFRLEQQRKLASMLNTLVYNGLSHGTGQQNTSLMESAIRCLHLMYERDCRHQFCPPMLWLAPARTSRPPVAVAARTHEALLANLRADDSLTVPTVGSIIATTPHVFPFEERVEMFREFVKMDKVSRKMAGEVGGPGSRSFEIVVRRSHVIEDGFRQLNSLGSRLKSAIHVSFVSECGLPEAGQDCGGLSKEFLTDIAKAAFSPEYGLFCQTSTEDRLLIPNASARYLDNGIQMIEFLGRVVGKALYEGILLDYSFSHVFVHKLLGRYSFLDELSTLDPELYRNLMYVKSYEGDVKELSLDFTVTEESFGKRHVIELIHGGKDVSVTNENKMQYVHAIADYKLNRQILPFSNAFYRGLTDLVSPSWLKLFSASEFNQLLSGGNHDIDVDDLRNNTRYTGGYTEGSRTISIFWEVIKGFEPKDRCLLLKFVTSCSRAPLLGFKYLQPAFTIHKVSCDVPIWASLGGQDVERLPTASTCYNTLKVCGTSKAAGSFFDLIHLRPRHSLTLLEGNISLHFELFLTAFVETTYEIRFIHDKLQPQLFIHFQTSYRAETSNDVRNLSLSNLQLRQDIELNRTKFLMANTTSKLENSEQTLLKIGIPLALSAAGGVCCGIMMARSSFPSLNPFKRISQLVKNESFDSQNHSAPLPLKQKETSPNIEEVLLGLKNRVEDLERKELGIEKQFIWYQNLKEKEALLMELKNTLVLDMAHIRFLEKEILLMEEENKRFESLVTEYLGVSEQFEGQKPENRLLEREVKKLKKRLKDQSKMIREKNLKIEESRTEFWRNNEEMERKKRMIEKLRNELRELKMQMENNASSSSPFKIEEEKEVTMKDVSKLSIGNHEQEQKENHKDLDQKESSPDKTTRPKLTEDVNKLSIGNHEQEQEEQKENHKDLAQKESSPDKTKYTRPRLLRRISDSGSSEMNTKMKKKIRPQ 1603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1974667 1988158 - CmaCh06G004290.1 Cma06g00429 295983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00429 1603 MobiDBLite consensus disorder prediction 1508 1603 - -
Cma06g00429 1603 CDD HECTc 810 1151 IPR000569 GO:0004842
Cma06g00429 1603 Gene3D Hect, E3 ligase catalytic domain 1053 1159 - -
Cma06g00429 1603 SUPERFAMILY Hect, E3 ligase catalytic domain 809 1152 IPR035983 GO:0004842
Cma06g00429 1603 ProSiteProfiles HECT domain profile. 834 1152 IPR000569 GO:0004842
Cma06g00429 1603 Coils Coil 1324 1351 - -
Cma06g00429 1603 MobiDBLite consensus disorder prediction 1508 1581 - -
Cma06g00429 1603 MobiDBLite consensus disorder prediction 555 575 - -
Cma06g00429 1603 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1152 - -
Cma06g00429 1603 MobiDBLite consensus disorder prediction 1479 1498 - -
Cma06g00429 1603 MobiDBLite consensus disorder prediction 544 575 - -
Cma06g00429 1603 Gene3D Hect, E3 ligase catalytic domains 812 1050 - -
Cma06g00429 1603 Coils Coil 1417 1486 - -
Cma06g00429 1603 Coils Coil 1379 1399 - -
Cma06g00429 1603 Coils Coil 1546 1566 - -
Cma06g00429 1603 Pfam HECT-domain (ubiquitin-transferase) 865 1152 IPR000569 GO:0004842
Cma06g00429 1603 SMART hect_3 828 1166 IPR000569 GO:0004842
Cma06g00429 1603 PANTHER UBIQUITIN-PROTEIN LIGASE E3C 3 1152 IPR044611 GO:0000209|GO:0061630
Cma06g00429 1603 Gene3D Hect, E3 ligase catalytic domain 936 1015 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00429 Cma-Chr6:1974667 Cma12g00210 Cma-Chr12:1009922 3.47E-50 dispersed
Cma17g00387 Cma-Chr17:2167340 Cma06g00429 Cma-Chr6:1974667 4.89E-89 transposed
Cma14g00254 Cma-Chr14:1112038 Cma06g00429 Cma-Chr6:1974667 3.29E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00429 K10588 - csv:101205886 1957.96