Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00430 ATGGTTCTCAAGACTGAGCTTTGTCGATTCAGTGGGGCCAAGATATACCCAGGGAGAGGCATCAGATTCATCCGGGCCGATTCTCAGGTGTTTCTCTTCGCCAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCATCAAAGCTTACCTGGACAGCCATGTATAGGAAGCAGCACAAGAAGGATATTGCTCAAGAGGCTGTAAAAAAGAGGAGACGTGCCACCAAGAAGCCCTACTCCAGGTCCATTGTTGGTGCAACATTGGAAGTCATCCAAAAGAAGAGAGCCGAAAAGCCCGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGTGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAAAAGAAGGCCAAGAAGGCAGAAGTGATGGCCAAGTCACAGAAGGCGCCAGGTAAGGGTAACGTTCCCAAGGGAGCTGCACCCAAGGGTCCAAAGCTGGGTGGTGGCGGTGGAAAGCGTTGA 495 50.51 MVLKTELCRFSGAKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVMAKSQKAPGKGNVPKGAAPKGPKLGGGGGKR 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1988523 1990905 + CmaCh06G004300.1 Cma06g00430 295984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00430 164 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Cma06g00430 164 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Cma06g00430 164 SMART 4TRASH 8 46 IPR011017 -
Cma06g00430 164 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Cma06g00430 164 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Cma06g00430 164 Gene3D - 69 138 - -
Cma06g00430 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 - -
Cma06g00430 164 PANTHER 60S RIBOSOMAL PROTEIN L24 1 164 IPR000988 -
Cma06g00430 164 MobiDBLite consensus disorder prediction 118 164 - -
Cma06g00430 164 Coils Coil 112 139 - -
Cma06g00430 164 MobiDBLite consensus disorder prediction 118 136 - -
Cma06g00430 164 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00430 Cma07g00875 CCT
Cma06g00430 Cma07g00875 ECH
Cma06g00430 Cma14g00256 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00430 Cma-Chr6:1988523 Cma09g00159 Cma-Chr9:682389 2.88E-19 dispersed
Cma14g00256 Cma-Chr14:1117867 Cma06g00430 Cma-Chr6:1988523 4.19E-90 wgd
Cma03g01183 Cma-Chr3:7903578 Cma06g00430 Cma-Chr6:1988523 7.89E-82 wgd
Cma06g00430 Cma-Chr6:1988523 Cma07g00875 Cma-Chr7:4112460 1.84E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00430 K02896 - twl:120012240 238.81