Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma06g00431 | ATGGAGTGGGCCACCGGAAGTTTCAGACCCTTTGTTTCTCGAGCGCCGGAATCTTCATTTGGGTTTCTCTATAACTATAATCTTGAACAATATCAGGGCATAGATGTGAAGCATTCAGCGATGGCGGGGGCGTCGGAGACGGTGCTGCAAGGGCTGGTTCCAGGGATGGACATGAACAGCTATGGAAATTTGGAGAAGAAGAAGCGGCTGAGCAGCGAGCAGCTCGACTCACTCGAACAAAGCTTCCAGGAGGAGATCAAGCTCGATCCCGACCGGAAGCAGAAGCTGGCCAAGGAGCTCGGTCTGCAGCCACGCCAGATCGCTGTTTGGTTCCAGAACCGCCGTGCGAGGTGGAAGGCAAAGCAACTCGAGCATCTCTACGACACTCTCAAACAAGAGTTCGATGCCATTTCTAGAGAGAAACATAAGCTTCAAGAGGAGGTAATGAAACTGAAAAGCATGCTGAGAGAGCTTCAAACTGCGAGGAACCAAGTGTCGACGGTGTACACTGAATTGTCGGGGGAGGAGACGGTGGAGAGCACCTCGGTCGGAGCTGGCTGCTCAAGCAAGCCGAGTGCGGCGGCGGTGGCAGAAGCAGCAGCGAACCAATACCCGACGCCACCGGAGCAGTGCAACTATGTGTTCAACACTGAGGAGTACAACCCCATGTCTCCAACCTTCTGGGGGACTCTCCCATCCTCTTATCATCCCCAGTAA | 717 | 53.97 | MEWATGSFRPFVSRAPESSFGFLYNYNLEQYQGIDVKHSAMAGASETVLQGLVPGMDMNSYGNLEKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRELQTARNQVSTVYTELSGEETVESTSVGAGCSSKPSAAAVAEAAANQYPTPPEQCNYVFNTEEYNPMSPTFWGTLPSSYHPQ | 238 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 1992141 | 1994196 | - | CmaCh06G004310.1 | Cma06g00431 | 295985 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma06g00431 | 238 | Coils | Coil | 61 | 81 | - | - | |
| Cma06g00431 | 238 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 1 | 221 | IPR045224 | GO:0003700 | |
| Cma06g00431 | 238 | SUPERFAMILY | Homeodomain-like | 55 | 123 | IPR009057 | - | |
| Cma06g00431 | 238 | Pfam | Homeobox associated leucine zipper | 121 | 155 | IPR003106 | GO:0006355|GO:0043565 | |
| Cma06g00431 | 238 | ProSiteProfiles | 'Homeobox' domain profile. | 61 | 121 | IPR001356 | GO:0003677 | |
| Cma06g00431 | 238 | Coils | Coil | 113 | 164 | - | - | |
| Cma06g00431 | 238 | PANTHER | HOMEOBOX LEUCINE ZIPPER PROTEIN | 1 | 221 | - | - | |
| Cma06g00431 | 238 | SMART | HOX_1 | 63 | 125 | IPR001356 | GO:0003677 | |
| Cma06g00431 | 238 | ProSitePatterns | 'Homeobox' domain signature. | 96 | 119 | IPR017970 | GO:0000981|GO:0006355 | |
| Cma06g00431 | 238 | CDD | homeodomain | 66 | 122 | IPR001356 | GO:0003677 | |
| Cma06g00431 | 238 | Pfam | Homeodomain | 66 | 119 | IPR001356 | GO:0003677 | |
| Cma06g00431 | 238 | PRINTS | Lambda-repressor HTH signature | 92 | 101 | IPR000047 | GO:0003677 | |
| Cma06g00431 | 238 | PRINTS | Lambda-repressor HTH signature | 101 | 117 | IPR000047 | GO:0003677 | |
| Cma06g00431 | 238 | Gene3D | - | 59 | 126 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma06g00431 | Cma07g00874 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma06g00431 | Cma-Chr6:1992141 | Cma11g01423 | Cma-Chr11:9382874 | 4.35E-30 | dispersed | |
| Cma14g00257 | Cma-Chr14:1120366 | Cma06g00431 | Cma-Chr6:1992141 | 1.58E-153 | wgd | |
| Cma03g01181 | Cma-Chr3:7887425 | Cma06g00431 | Cma-Chr6:1992141 | 3.08E-47 | wgd | |
| Cma06g00431 | Cma-Chr6:1992141 | Cma07g00874 | Cma-Chr7:4111648 | 3.98E-47 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 35167 | PF00046 | Homeodomain | 1.50E-17 | CL0123 | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma06g00431 | - | - | csv:101221983 | 437.958 |