Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00433 ATGGAAAGCGATAGTTTAGGAGGCGACTGTGGAGGTGGAGGCGGTGGCGGTGGCGGTGGCGGAGGAGGAATGTTTTCCGGGATGAATTCGGCAATGTTGGGATTGGATTTACCTCTTCATCCACACCCCACGAATCCCCCGAATTCTCACCAATTACATCACCCTTCAATGGTGTCTTACGTCCCACAAAAGCCGCAACTCCAACAACAACCGCCGCCTACCGCCGTGAGATACCCTTACCCTGCGAAGCCCAAGCCGCAGCAGTCGAATCTCAGCGATGACGAGGAGCAGGGGTTCGCGGTGGAGGACGGCAACAGCGATGGAAAGAAGAAGATCTCCCCATGGCAGAGGATGAAATGGACGGATATGATGGTCCGGCTGTTAATCACGGCGGTGTTTTACATCGGCGATGAAGGTGGGACGGAGCAAGCGGACCACGCCGGCAAGAAAAAACCAGTGGGACTGCTGCAGAAGAAAGGGAAATGGAAATCGGTTTCCAGAGCGATGATGGAGAAGGGATTTTACGTTTCGCCACAGCAATGCGAAGACAAATTCAACGATTTAAACAAAAGATATAAACGAGTTAACGACATTTTGGGGAAAGGAACCGCTTGCAGAGTCGTCGAGAATCAAACGCTATTGGATTCGATGGAATTAACACCAAAAACGAAGGAAGAAGTTCGAAAATTACTCAATTCTAAACATCTATTCTTCAGAGAAATGTGCGCTTACCACAACACTTGCCGTCACAGCACTGGCAACAACGGTGGAGGAGGCGCCCATCCTTCTCCGGACACTGCAGCAGAACCACCCTCCCACCTTCAACAACACCAACAACAACAACAACAACAACAACGATGCTTCCACGCGACGGAGACCGCCGCTGCCGCGGCGACAGTAGGAGCGGACGGAGATGACGATGATGAGGACGACGAAGAAGACGAATCGGAGGAAGATGAGGATGACGAGGAGGAGGAGGAAATTGAAGGAACTTCGAGAGGTCACGAAGAGGAGGATGAGACGGAATCGAGGAAGCGGGCGAGGAAAGGGGGGATTGCAGTGGCGGCGGTGGCTGCGATGCAGCAATTGAATGCAGAGGTGATCGGAGTGCTGCAGGACGGGGGGAGGAGTCTGTGGGAGAAGAAGCAGTGGATGAAGAGCCGGTTGATTCAGCTTGAAGAGCAACAGGTGAAGTACCAATCGCAGGCGTTCGAGCTGGAGAAGCAGCGGCTGAAATGGCTGAAGTTCAGGAGCAAGAAGGAGAGGGATATGGAGAGGGCGAAGCTGGAGAACGAGAAGAGAAGGCTGGAGACGGAGAGGATGGTGCTGATGGTGAAGCAGAAGGAGTTGGATTGGATGGATATGCACCATTATCAGCAGCAGCATTCCTCCAATAAGCGAGGGGATCCATCGTCGATTACAGGTTGA 1428 52.8 MESDSLGGDCGGGGGGGGGGGGGMFSGMNSAMLGLDLPLHPHPTNPPNSHQLHHPSMVSYVPQKPQLQQQPPPTAVRYPYPAKPKPQQSNLSDDEEQGFAVEDGNSDGKKKISPWQRMKWTDMMVRLLITAVFYIGDEGGTEQADHAGKKKPVGLLQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDLNKRYKRVNDILGKGTACRVVENQTLLDSMELTPKTKEEVRKLLNSKHLFFREMCAYHNTCRHSTGNNGGGGAHPSPDTAAEPPSHLQQHQQQQQQQQRCFHATETAAAAATVGADGDDDDEDDEEDESEEDEDDEEEEEIEGTSRGHEEEDETESRKRARKGGIAVAAVAAMQQLNAEVIGVLQDGGRSLWEKKQWMKSRLIQLEEQQVKYQSQAFELEKQRLKWLKFRSKKERDMERAKLENEKRRLETERMVLMVKQKELDWMDMHHYQQQHSSNKRGDPSSITG 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2006352 2007779 + CmaCh06G004330.1 Cma06g00433 295987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00433 475 MobiDBLite consensus disorder prediction 269 290 - -
Cma06g00433 475 MobiDBLite consensus disorder prediction 35 112 - -
Cma06g00433 475 Coils Coil 417 446 - -
Cma06g00433 475 MobiDBLite consensus disorder prediction 302 333 - -
Cma06g00433 475 Pfam Myb/SANT-like DNA-binding domain 117 243 IPR044822 -
Cma06g00433 475 MobiDBLite consensus disorder prediction 253 347 - -
Cma06g00433 475 Coils Coil 389 409 - -
Cma06g00433 475 MobiDBLite consensus disorder prediction 455 475 - -
Cma06g00433 475 Gene3D - 120 194 - -
Cma06g00433 475 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 23 472 - -
Cma06g00433 475 MobiDBLite consensus disorder prediction 46 65 - -
Cma06g00433 475 MobiDBLite consensus disorder prediction 66 80 - -
Cma06g00433 475 PANTHER F16F4.11 PROTEIN-RELATED 23 472 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00433 Cma14g00260 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02448 Cma-Chr4:16837923 Cma06g00433 Cma-Chr6:2006352 4.56E-52 dispersed
Cma06g00433 Cma-Chr6:2006352 Cma15g00598 Cma-Chr15:2837031 1.30E-80 dispersed
Cma14g00260 Cma-Chr14:1130008 Cma06g00433 Cma-Chr6:2006352 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35168 PF13837 Myb_DNA-bind_4 2.90E-21 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00433 - - cmax:111498678 818.92