Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00434 ATGGCTTCCTGTGACGATGACTTCTCTCTCCTCAGCGACGATCACCACCACCACAACCACCACCAATCCACCACCAACCACCATCATATTCCAAATCCTCAGCATATCCATCAATCCTACGTTCCTCACCGCTTCACGCCTCGATCGTCTTCTGTCCACCCACCGCCGCCTCCGCCACCTTCCACTCAAGCGGCTCAGCCGATTCTCGCGCCGTCCGGAAGTCCGAAGAAGATCGGCGGGCGGATAGATAAGGAGGAGGAGGAGGAGGAGGACGATGGGGAGGACTATGGCGATGCTACTTTCTGCTCCAGTTCATTTGGTAACGGAGATCAGAATCGGATTGGTGTTGGTGTTGGTGTTGATGTTGATGTGCGAGTTGAGAAGAGGAAGGATCAGTCGGATGAGCTTGGGGAGGAAGGAGGTTCTTATAGTTACAAAAGAGCGAAGCCTTCGCCCAGTGGGGGAGAATACAGGAAGGATCGAGAGGAGTGGAGCGATGCGGCTATCTCGTGCCTTCTGGATGCGTATACGGAGAAATTTACGCAGCTGAATAGGGGGAATTTGAGAGGGAGGGATTGGGAGGAAGTGGCTGCAACTGTGAGTGAACGGTGCGAGAAGCAGAGCAAGAGCGTAGAGCAGTGTAAGAACAAAGTAGACAACTTAAAGAAGAGGTACAAGTTGGAGAGGCAAAGGATGAGTAACGGTGGCATTTCGATCAGCCACTGGCCTTGGTATAAGCAGATGGAGCAAATTGTTGGAAATTCTTTGACGATGAAGGTTGTGTCTGACGAAGATCGAAGCGTTGGCTCATCGGCGACTACTCCGAGGATATCAAAGAGGTACGTTATTCCCGCACCCAATACTACTGGGCATATGAATAATCTAAAACCCAAATCAGTTTCCAGTCCAAGGTGGCGAAGAGTTGTCTTTAAAATAAGTGGTACAGCTCTTACAGGGACTGGTCCTAACAACATCGACCCGAAGGTTACAATGGCAATTGCTAGAGAAGTTGTAATAGCTTGTCGCCTGGGTGTGGAGGTGGCAATCGTTGTTGGAGGTCGTAACTTCTTTTGTGGAGATTCTTGGGTGACTGCAACAGGTTTAGATAGATGTACAGCATACCAAATTGGTATGATGGCTACTTTGATGAATTCAATACTTCTCCAGTCAGCAATAGAGAATATGGGAGTCCAGACTCGTGTCCAATCTGCATTTATGCTTCATGAGGTTGCTGAACCATACAGTAGGCAACGTGCTATAAGGCATCTTGAGAAAGGCAGAGTAGTTATATTTGGTGGCATTGGCACTGGCACTGGCAATCCCCTATTTTTCACTGATACAGCTGCAGCTCTTCGAGCTTCTGAGATTCATGCCGAGGCAGTTCTTAAAGGTACCAATGCTGATGGGGTGTATGACTGCAGTTCGCAAGACAACAATTTTACATTCAAGCACATCTCTTTCAGAGAGTTGGCCTCAAGAGGTGCCACAAGCATGGACGTGACTGCATTAACTTTCTGCGAAGAGAACAACATTCCGGTCGTTGTCTTTAATCTTCTTGAGCCTGGAAATATCTCAAAAGCATTGTGCGGAGACCAAGTGGGTACACTGATTGATCAAAATGGAGGAATTAGCTAG 1635 48.26 MASCDDDFSLLSDDHHHHNHHQSTTNHHHIPNPQHIHQSYVPHRFTPRSSSVHPPPPPPPSTQAAQPILAPSGSPKKIGGRIDKEEEEEEDDGEDYGDATFCSSSFGNGDQNRIGVGVGVDVDVRVEKRKDQSDELGEEGGSYSYKRAKPSPSGGEYRKDREEWSDAAISCLLDAYTEKFTQLNRGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERQRMSNGGISISHWPWYKQMEQIVGNSLTMKVVSDEDRSVGSSATTPRISKRYVIPAPNTTGHMNNLKPKSVSSPRWRRVVFKISGTALTGTGPNNIDPKVTMAIAREVVIACRLGVEVAIVVGGRNFFCGDSWVTATGLDRCTAYQIGMMATLMNSILLQSAIENMGVQTRVQSAFMLHEVAEPYSRQRAIRHLEKGRVVIFGGIGTGTGNPLFFTDTAAALRASEIHAEAVLKGTNADGVYDCSSQDNNFTFKHISFRELASRGATSMDVTALTFCEENNIPVVVFNLLEPGNISKALCGDQVGTLIDQNGGIS 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2008729 2014450 + CmaCh06G004340.1 Cma06g00434 295988
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00434 544 PANTHER URIDYLATE KINASE 1 543 - -
Cma06g00434 544 CDD AAK_UMPK-PyrH-Ec 306 538 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma06g00434 544 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 543 IPR011817 GO:0006221|GO:0009041
Cma06g00434 544 Gene3D - 296 543 IPR036393 -
Cma06g00434 544 SUPERFAMILY Carbamate kinase-like 304 537 IPR036393 -
Cma06g00434 544 MobiDBLite consensus disorder prediction 129 159 - -
Cma06g00434 544 Pfam Myb/SANT-like DNA-binding domain 161 251 IPR044822 -
Cma06g00434 544 Hamap Uridylate kinase [pyrH]. 303 538 IPR015963 GO:0005737|GO:0006221|GO:0033862
Cma06g00434 544 Pfam Amino acid kinase family 307 517 IPR001048 -
Cma06g00434 544 MobiDBLite consensus disorder prediction 15 115 - -
Cma06g00434 544 MobiDBLite consensus disorder prediction 49 65 - -
Cma06g00434 544 Gene3D - 164 227 - -
Cma06g00434 544 Coils Coil 204 231 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00434 Cma14g00262 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00434 Cma-Chr6:2008729 Cma07g00792 Cma-Chr7:3592281 1.89E-96 dispersed
Cma14g00262 Cma-Chr14:1132066 Cma06g00434 Cma-Chr6:2008729 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35169 PF00696 AA_kinase 9.00E-22 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00434 - - cmax:111498641 996.882