Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00435 ATGGTGATGATGATGGTGAAGGAGAAGAAGGAGGTGAAGATTTTCAGTTCCGCCATAGCTTTTCTTCTCTGCATTACCCTTTTGATTTCACCTTCTCTCTGTTTAGATGATACTTCTGCTCTGATTCGCTTCCGTCTTCAAGCTGATTCCCATGGCGGCCTCCTCGGAAACTGGACTGGTTCTGATGCTTGTGGTTCTTCATGGCGGGGAGTTCAGTGCTCTGTTAATGGCCGCGTTATCGCTCTTTCTCTTCCTTCTATGAACTTGCGTGGCCCCATTGAGTCTTTAGCGCCGCTCGATCAGCTCCGCGTACTCGATCTCCATGACAACCGTTTGAACGGAACCATTTCGCCGATTGTGAACTGTACGAATCTCAAGCTGTTGTATCTCTCTGGCAATGACTTCTCCGGCGAGATTCCGCCGGGATTCTCGTCTCTCAGACGACTTCTCCGACTGGATTTGTCTGATAACAACATTCGCGGCGGAATTCCTGAGGATCTCTCGAAATTGTCTCGACTTCTTACTCTCCGTTTGCAGAATAATGTCCTCTCCGGCACGGTTCCCGATCTCTCTGTTTCGCTTGTGAATCTTACTGAAGTTAATTTAACCAACAATGAACTGTACGGACGGTTACCTGACGGGATGGTGAAGAAATTTGGCGAGAAGAGTTTCACCGGTAACGAAGGGGTCTGTGGGTCGAGTCCTTTACCGATCTGTTCGGTTACTAGTTCACCGCCGGCGTCGGATTCCGGCCGAACGGTACCATCAAATCCAATCTCAATACCGAAAAACCCTAATATCAGTCCGAACATTAAGGAATCGCGAAAAGGGCTCAGCCCTGGCGCGATTGTTGCGATTGTGATCGCAAACTGCGTTGCATTGCTCGTGATTATCTCCTTCGTCGTCGCGTATTACTGCGCTCGTGACCGGAGCTCGAGTTCCATGGCGGGAAGCGACAGTGGGAAGAGAAGAAAGAGCGGAAGTAGCTACGGAAGCGAGAAAAGAGTCTACGCCAATGGCGGTGGCGACAGTGACAGTACTAACGCCACAGATAGAAGCAAACTGGTGTTCTTCGATTGGAAGAAGCAATTCGAGCTTGAAGATTTGCTGAGAGCCTCGGCGGAGATGCTCGGAAAAGGAAGCTTGGGGACTGTGTACAGGGCGGTACTCGACGACGGTTGTACAGTGGCGGTGAAGAGATTGAAGGATGCAAATCCATGTCCGAGGAAGGATTTTGAACAGTACATGGATGTGATTGGGAAGCTGAAACATCGAAATATTGTTAGATTGAGAGCTTTTTACTATGCTAAAGAAGAAAAGCTTCTTGTTTATGATTATCTTCCTAATGGAAGCTTGCATTCTCTTCTCCATGGTAATCGAGGTCCAGGAAGGATTCCATTGGATTGGACGACGAGAATCAGTTTGCTTTTGGGTGCTGCTCGTGGTCTAGCAAGAATCCATGGAGAATACAATGCTTCAAAGATCCCCCATGGAAATGTCAAGTCTTCTAACGTTCTTCTTGACAAAAATGGAGTTGCTTGCATTTCTGATTTTGGGTTGTCTCTCCTTCTCAATCCTGTCCACGCCATTGCTAGGTTGGGAGGGTACAAGGCTCCGGAACAGGACGAGACAAAACGACTCTCTCAAAAGGCAGATGTCTATAGCTTTGGAGTTTTGATGCTAGAAGTCTTGACCGGGCGTGCACCATCGCTTTACCCATCGCCTTTGCACTCACGAAACGACGAGCAAGAGCAGGCAGTAGATCTCCCCAATTGGGTTCGATCCATAGTGAAAGAAGAGTGGACGGCTGAGGTGTTTGATCCCGAGCTATTACGGTACAAGAACATTGAGGAGGAGCTTGTGTCGATGCTTCATGTTGGGTTGGTTTGCATTCTTCCTCAGCCTGAGAAGAGACCGACGATGGTGGAAGTGGCAAAGATGATCGAAGATATCAGGGTCGAGCAATCCCCGCTCGGAGAAGATTACGACGAATCACGTAATTCGCTTTCGCCTTCCCTTGCAACCACAGAAGATGGCATGGTGTAG 2046 48.63 MVMMMVKEKKEVKIFSSAIAFLLCITLLISPSLCLDDTSALIRFRLQADSHGGLLGNWTGSDACGSSWRGVQCSVNGRVIALSLPSMNLRGPIESLAPLDQLRVLDLHDNRLNGTISPIVNCTNLKLLYLSGNDFSGEIPPGFSSLRRLLRLDLSDNNIRGGIPEDLSKLSRLLTLRLQNNVLSGTVPDLSVSLVNLTEVNLTNNELYGRLPDGMVKKFGEKSFTGNEGVCGSSPLPICSVTSSPPASDSGRTVPSNPISIPKNPNISPNIKESRKGLSPGAIVAIVIANCVALLVIISFVVAYYCARDRSSSSMAGSDSGKRRKSGSSYGSEKRVYANGGGDSDSTNATDRSKLVFFDWKKQFELEDLLRASAEMLGKGSLGTVYRAVLDDGCTVAVKRLKDANPCPRKDFEQYMDVIGKLKHRNIVRLRAFYYAKEEKLLVYDYLPNGSLHSLLHGNRGPGRIPLDWTTRISLLLGAARGLARIHGEYNASKIPHGNVKSSNVLLDKNGVACISDFGLSLLLNPVHAIARLGGYKAPEQDETKRLSQKADVYSFGVLMLEVLTGRAPSLYPSPLHSRNDEQEQAVDLPNWVRSIVKEEWTAEVFDPELLRYKNIEEELVSMLHVGLVCILPQPEKRPTMVEVAKMIEDIRVEQSPLGEDYDESRNSLSPSLATTEDGMV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2015651 2018377 - CmaCh06G004350.1 Cma06g00435 295989
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00435 681 Pfam Leucine Rich repeats (2 copies) 101 136 IPR025875 -
Cma06g00435 681 Gene3D Ribonuclease Inhibitor 36 144 IPR032675 -
Cma06g00435 681 SUPERFAMILY L domain-like 35 215 - -
Cma06g00435 681 MobiDBLite consensus disorder prediction 311 325 - -
Cma06g00435 681 SUPERFAMILY Protein kinase-like (PK-like) 375 648 IPR011009 -
Cma06g00435 681 MobiDBLite consensus disorder prediction 311 345 - -
Cma06g00435 681 CDD STKc_IRAK 377 651 - -
Cma06g00435 681 MobiDBLite consensus disorder prediction 656 681 - -
Cma06g00435 681 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Cma06g00435 681 MobiDBLite consensus disorder prediction 242 272 - -
Cma06g00435 681 Pfam Protein kinase domain 375 646 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00435 681 Gene3D Phosphorylase Kinase; domain 1 342 446 - -
Cma06g00435 681 ProSiteProfiles Protein kinase domain profile. 371 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00435 681 PANTHER LRR RECEPTOR-LIKE KINASE 17 672 - -
Cma06g00435 681 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 17 672 - -
Cma06g00435 681 Gene3D Transferase(Phosphotransferase) domain 1 447 669 - -
Cma06g00435 681 Gene3D Ribonuclease Inhibitor 145 245 IPR032675 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00435 Cma14g00263 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00435 Cma-Chr6:2015651 Cma18g01004 Cma-Chr18:8432568 2.12E-177 dispersed
Cma14g00263 Cma-Chr14:1137576 Cma06g00435 Cma-Chr6:2015651 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68631 PF00069 Pkinase 8.80E-33 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00435 - - bhj:120091526 1136.71