Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00445 ATGGAAATGCCCGGTAGAAGATTGAACTATACGCTTCTCAGTCAAATTCCAGATGACCAAAACAGTGGCGGTCCTGTCAGAGCTTCGTCATCGTTGATCGAATTATCATCGGGAGAGTGGAAGAACGACAAGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGGTGATCACAGGGCGAGCCAGCAGCCGCAGGTGAATTGGATCGGCAATATGTACTCAGCCTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTATTATGCACTGACACCATCGACTACAGTGGCTAATGAGACGGATGATGTGCTTAGGATTGTAGGCGATTCAAGAGCTCAGGTAGCCGGGACTGGAGGATGCTTTGGTAAGAGCTGGGCGCAACATACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTCCGGCTTTCCTCAGATGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATTAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAATTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTTTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATTCTTCAATTGAAGTTGTTTTGATTGATCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAATCGTGTCCGAAGCATTTCTTGCAGCTCTATTACCACAAAAGAGGTTGTAGACCTGCTTGCAAAACTTGTCTGTAGGAGTTTCGGTGGCTCGGTTTCTGGAGAAGATGTGTTGGTGCCCAGCTGGAAGGAGTGCAGTAATAACTTGAAGGAGACCTTAGGCTCTGTGGTTGTTCCTCTTGGTGCACTCTCTGTAGGACTCTGCCGACATCGTGCTCTTCTTTTCAAAGTGTTAGCTGATACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCGTGCCATGATTTTTCTTCTTGTCTTGTGCAGTTTGGGTTTGACAAGGAGTATCTGGTTGACTTAATTGGTAATCCTGGTTGCTTATATGAGCCTGATTCGTTACTCAATGGTCCCTCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGGCAGCCATTGATTTCAGGTCACTGGCTAAGCAGTACTTTGCAGATTGCCAGTTACTTAATGTTGTTTTTGATGAATGTTCCTCAGAAGTTACTATGGATGGAGAAGATGGTGCACTTCCCTTGTATCCAGAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGTTCATGATGAAAAATCCATTTTACTGCATGGGAAAACTTCGCAGCCTAACTCCCAAGACGGAGACTTCCAACGATTTAAACCGCTACAACCAACTATCCTGGTTGAGGATCCGATCCCCCTAAAGTACAGCCGTAGAAATGTGCAGTCACCTTTTGATATGTCCCAGCCAATGATGGATTTTACTATGGACGTAAGGTTTGCGCAGGGAGGTCAGCTAATACCAAACACTCGGAGTAAAACACTTCCCCTTGGTGCAGAAGATTTAGACATTCCATGGGAGGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTCATTCTGAGTGTATTACGGGTCTAATTTCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATTATGAAATCCTTGCGACATCCTAACATTGTACTGTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCACAAGTCAGGTGTTAAAGACATAGATGAAACACGTCGGATAAATATGGCTTATGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCCGCGGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGTGATGAGCCCTCAAATGAAAAATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTCAAGTGCAAAAGGCTTGAAATCCCACGTAATGTAAATCCCAAATTGGCTACCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTCTCCAGCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCATCTCAACAAGGCCATGCAGACACACTCTCGATGAATCCCTTAGAGGAGGGCGATTCGGTATCTCCAATTGGAGCGAATTCTTCTTCTGCTCAGTCGGATTCTGATGCTCCTGGAGTTTCTTCTGATCCTGAATTGATGATGAGCATTGGGTTTTCTTCGTCTCCGACTGACGGAGGCTCTTGGACTGAAAACCCAATGCCATCTTCTTCTGCACACAACCTGTCTGACGTTATACCGAAACCAGACAAAGGACCGTCGGATCCATTTTCCATGTGGGGTTCGGGTACCGATGTGCCTCAACCTCTAGAAGGCCTTCATGGTCAGCTAGTTCCGCCATTTCTGTGGAAGACCTTTGATCTTGTTGAGGATCCTGCGCTTGATCCGATTGTGTCTTGGGGTTCAGCAGGGCAGAGTTTTGTGGTTTGGGATCCTGTGGAGTTTTCTAGAGTGATTCTTCCATCTAATTTCAAGCACAACAACTTCTCCAGTTTTGTCAGACAGCTAAATACTTATGTGGGCTTGAAGAAATGCTCCCCTCCCTGTGTGAAGGGGACTGAGGACTTCCATCTCCAGCAGGGGTTCCGCAAGATTGATGCAGACAAGTGGGAATTTGCAAACGATGCCTTCCAACGAGGGAAGAGACACTTGTTGAAGAACATTCAGAGGCGAAAATCACCTCATTCTCAGCAGATTGGAAGTTTGATAGGGCCATCTACTGGACCAGGGAAGTCTGGATTGGAAGATGAGATTGGGAGGTTAAAGAAAGAGAGGAGCATGTTAATGCAGGAGGTTGTTGAATTGCAGCAGGAGCAGAAGGGAACTGCCCAGCATGTGAAGACGGTGAATCGACGCCTCCAATCGGCCGAGCAGAAGCAGAAGCAGATGATTTCCTTTTTGGCAAAGTTGCTTCAAAATCCTGAGTTTTTATTCCGCTTGCAGAAGAAGAAGGAACAGAGAGATATTGATTCCCCAAGGATGAAACGGAAATTTGTTAAGCAGCATCAACACGAAACCGATGGTTTTACGCCATTCATGGAAGGGCAGATTGTGAAATATCAACCGGATTGGGGAAGTCTCGCCACACCGGAACTGAATCCAAGCCTGCTTGAAGGACCTTCTGCTTACCTTCTGCAGGGAGTGTCTGGAGATTTGGGATCAATTCCAGAAAGCATGTCCAATTTTCAATATGAGAATGATCCATCTAGGGATGTAATTACGTCTGAGGAATTAGCATTCCATCATGGAATTGTAAAACCAACAGAGCTGAGTGTAGAGCCTTCAAACATGTCAATGGAGGATCAACATTCCAAGGGAAAGGCTATTGGGAGTCCCTCACAAGATGTCAATCCTGACTACTTTGTCTCTTTGGCAGAAAGTATTCAACAGTTCTCACACCTTGGAACTGGAAATGTCATTAAACCAGAAGAAATTTGGAGCACGGGTTTGAATGTCAATACTGGCACGTCCAGTTCAAACACCGAGTTGTGGAGCAATCCAGTCGATTTCGAGGATCCATTTTTGCAAGGTTCTAGCAGATTGTCGCCATTCTGGGACATAGGTTCGCTGCAGGCTGGAGATTCACACACGACTACGTGGTCAGCTTCTGGCTTCCCATTTGATGATCCAGATAATCGAGCTTGCCCCGAAAAAACAGACGACTCTGAGGATGAATAA 4203 45.54 MEMPGRRLNYTLLSQIPDDQNSGGPVRASSSLIELSSGEWKNDKRKLERGLDWEAGGDHRASQQPQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYALTPSTTVANETDDVLRIVGDSRAQVAGTGGCFGKSWAQHTEESYQLQLALALRLSSDATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKIPDGFYLIHGMDPYVWTLCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDQRTDPNLKDLQNRVRSISCSSITTKEVVDLLAKLVCRSFGGSVSGEDVLVPSWKECSNNLKETLGSVVVPLGALSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDFSSCLVQFGFDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEAAIDFRSLAKQYFADCQLLNVVFDECSSEVTMDGEDGALPLYPEQFDRKFTNRSNQMLVTGVHDEKSILLHGKTSQPNSQDGDFQRFKPLQPTILVEDPIPLKYSRRNVQSPFDMSQPMMDFTMDVRFAQGGQLIPNTRSKTLPLGAEDLDIPWEDLVLKERIGAGHSECITGLISGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAYDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKCKRLEIPRNVNPKLATLIVACWADEPWKRPSFSSIMETLKPMTKQAPSQQGHADTLSMNPLEEGDSVSPIGANSSSAQSDSDAPGVSSDPELMMSIGFSSSPTDGGSWTENPMPSSSAHNLSDVIPKPDKGPSDPFSMWGSGTDVPQPLEGLHGQLVPPFLWKTFDLVEDPALDPIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYVGLKKCSPPCVKGTEDFHLQQGFRKIDADKWEFANDAFQRGKRHLLKNIQRRKSPHSQQIGSLIGPSTGPGKSGLEDEIGRLKKERSMLMQEVVELQQEQKGTAQHVKTVNRRLQSAEQKQKQMISFLAKLLQNPEFLFRLQKKKEQRDIDSPRMKRKFVKQHQHETDGFTPFMEGQIVKYQPDWGSLATPELNPSLLEGPSAYLLQGVSGDLGSIPESMSNFQYENDPSRDVITSEELAFHHGIVKPTELSVEPSNMSMEDQHSKGKAIGSPSQDVNPDYFVSLAESIQQFSHLGTGNVIKPEEIWSTGLNVNTGTSSSNTELWSNPVDFEDPFLQGSSRLSPFWDIGSLQAGDSHTTTWSASGFPFDDPDNRACPEKTDDSEDE 1400
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2054179 2067031 + CmaCh06G004450.1 Cma06g00445 295999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00445 1400 Pfam Protein tyrosine and serine/threonine kinase 588 835 IPR001245 GO:0004672|GO:0006468
Cma06g00445 1400 SMART hsfneu3 952 1066 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma06g00445 1400 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 123 848 - -
Cma06g00445 1400 Gene3D Phosphorylase Kinase; domain 1 564 660 - -
Cma06g00445 1400 Gene3D Transferase(Phosphotransferase) domain 1 661 849 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 1064 1090 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 1066 1080 - -
Cma06g00445 1400 ProSiteProfiles Protein kinase domain profile. 582 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00445 1400 MobiDBLite consensus disorder prediction 837 852 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 864 881 - -
Cma06g00445 1400 PRINTS Heat shock factor (HSF) domain signature 956 979 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma06g00445 1400 PRINTS Heat shock factor (HSF) domain signature 1007 1019 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma06g00445 1400 PRINTS Heat shock factor (HSF) domain signature 994 1006 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma06g00445 1400 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 123 848 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 837 937 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 889 918 - -
Cma06g00445 1400 CDD STKc_MAP3K-like 590 835 - -
Cma06g00445 1400 Gene3D - 949 1067 IPR036388 -
Cma06g00445 1400 SUPERFAMILY Protein kinase-like (PK-like) 585 835 IPR011009 -
Cma06g00445 1400 Pfam HSF-type DNA-binding 956 1066 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cma06g00445 1400 SUPERFAMILY Winged helix DNA-binding domain 953 1066 IPR036390 -
Cma06g00445 1400 Coils Coil 1086 1113 - -
Cma06g00445 1400 MobiDBLite consensus disorder prediction 1373 1400 - -
Cma06g00445 1400 PRINTS Tyrosine kinase catalytic domain signature 656 669 IPR001245 GO:0004672|GO:0006468
Cma06g00445 1400 PRINTS Tyrosine kinase catalytic domain signature 696 714 IPR001245 GO:0004672|GO:0006468
Cma06g00445 1400 PRINTS Tyrosine kinase catalytic domain signature 806 828 IPR001245 GO:0004672|GO:0006468
Cma06g00445 1400 PRINTS Tyrosine kinase catalytic domain signature 762 784 IPR001245 GO:0004672|GO:0006468
Cma06g00445 1400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 702 714 IPR008271 GO:0004672|GO:0006468
Cma06g00445 1400 Pfam Ethylene-responsive protein kinase Le-CTR1 182 386 - -
Cma06g00445 1400 SMART serkin_6 582 839 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00445 Cma14g00279 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01473 Cma-Chr1:10384629 Cma06g00445 Cma-Chr6:2054179 0 dispersed
Cma06g00445 Cma-Chr6:2054179 Cma09g00596 Cma-Chr9:2765119 0 dispersed
Cma17g01203 Cma-Chr17:8307360 Cma06g00445 Cma-Chr6:2054179 1.83E-58 dispersed
Cma19g00021 Cma-Chr19:123363 Cma06g00445 Cma-Chr6:2054179 2.74E-59 dispersed
Cma14g00279 Cma-Chr14:1176406 Cma06g00445 Cma-Chr6:2054179 0 wgd
Cma03g01176 Cma-Chr3:7858266 Cma06g00445 Cma-Chr6:2054179 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35171 PF07714 PK_Tyr_Ser-Thr 8.10E-68 CL0016 Cma TF
68632 PF07714 PK_Tyr_Ser-Thr 8.10E-68 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00445 K14510 - csv:101208452 1459.12