Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00445 | ATGGAAATGCCCGGTAGAAGATTGAACTATACGCTTCTCAGTCAAATTCCAGATGACCAAAACAGTGGCGGTCCTGTCAGAGCTTCGTCATCGTTGATCGAATTATCATCGGGAGAGTGGAAGAACGACAAGAGGAAGTTGGAAAGAGGATTGGATTGGGAAGCTGGTGGTGATCACAGGGCGAGCCAGCAGCCGCAGGTGAATTGGATCGGCAATATGTACTCAGCCTTTGGTTTGCAGAGGCAGTCCAGTGGAAGCAGCTTTGGAGAGAGCTCGATATCCGGGGAGTATTATGCACTGACACCATCGACTACAGTGGCTAATGAGACGGATGATGTGCTTAGGATTGTAGGCGATTCAAGAGCTCAGGTAGCCGGGACTGGAGGATGCTTTGGTAAGAGCTGGGCGCAACATACGGAGGAGAGTTATCAACTGCAGTTGGCATTGGCGCTCCGGCTTTCCTCAGATGCGACTTGTGCTGATGATCCTAATTTCTTAAATCCATTTCAGGATGATTCAGCTTTAAGGAGGTCGATTAGCTCTGCTGAGGCTGTGTCACATCGATTTTGGGTGAATGGCTGTCTATCATACTTTGACAAAATTCCTGATGGGTTTTATCTAATCCATGGAATGGATCCATATGTATGGACTTTGTGCACCAGCCTGCCTGATAATGATCGCATGCCATCAATTGAATCTCTAAAGTCTGTTGATCCTAGCACAGATTCTTCAATTGAAGTTGTTTTGATTGATCAGCGCACTGATCCCAACTTAAAAGACCTCCAAAATCGTGTCCGAAGCATTTCTTGCAGCTCTATTACCACAAAAGAGGTTGTAGACCTGCTTGCAAAACTTGTCTGTAGGAGTTTCGGTGGCTCGGTTTCTGGAGAAGATGTGTTGGTGCCCAGCTGGAAGGAGTGCAGTAATAACTTGAAGGAGACCTTAGGCTCTGTGGTTGTTCCTCTTGGTGCACTCTCTGTAGGACTCTGCCGACATCGTGCTCTTCTTTTCAAAGTGTTAGCTGATACAATTGATTTACCCTGTCGAGTAGCCAAGGGCTGTAAATATTGCTCGTGCCATGATTTTTCTTCTTGTCTTGTGCAGTTTGGGTTTGACAAGGAGTATCTGGTTGACTTAATTGGTAATCCTGGTTGCTTATATGAGCCTGATTCGTTACTCAATGGTCCCTCCTCCATTTTGATCTCCTCGCCATTGCGATTTCCACGACTAAAGCCAGTAGAGGCAGCCATTGATTTCAGGTCACTGGCTAAGCAGTACTTTGCAGATTGCCAGTTACTTAATGTTGTTTTTGATGAATGTTCCTCAGAAGTTACTATGGATGGAGAAGATGGTGCACTTCCCTTGTATCCAGAGCAGTTTGATAGGAAGTTCACAAACAGAAGCAACCAAATGCTTGTCACTGGTGTTCATGATGAAAAATCCATTTTACTGCATGGGAAAACTTCGCAGCCTAACTCCCAAGACGGAGACTTCCAACGATTTAAACCGCTACAACCAACTATCCTGGTTGAGGATCCGATCCCCCTAAAGTACAGCCGTAGAAATGTGCAGTCACCTTTTGATATGTCCCAGCCAATGATGGATTTTACTATGGACGTAAGGTTTGCGCAGGGAGGTCAGCTAATACCAAACACTCGGAGTAAAACACTTCCCCTTGGTGCAGAAGATTTAGACATTCCATGGGAGGATCTTGTTTTAAAAGAAAGAATTGGAGCAGGTCATTCTGAGTGTATTACGGGTCTAATTTCAGGTTCCTTTGGAACTGTACATCGTGCTGATTGGCATGGATCGGAAGTTGCTGTGAAGATCCTCACAGAACAAGACTTCCATCCTGAACGTGTTAATGAGTTTCTGAGAGAGGTTGCTATTATGAAATCCTTGCGACATCCTAACATTGTACTGTTTATGGGTGCCGTGACCAAGCCACCAAACCTGTCCATTGTCACTGAATATCTATCGAGAGGTAGCTTGTATAGGCTTTTGCACAAGTCAGGTGTTAAAGACATAGATGAAACACGTCGGATAAATATGGCTTATGATGTGGCAAAGGGAATGAACTATCTCCATAGACGTGACCCTCCAATTGTTCATCGTGATTTAAAATCACCAAATCTTTTAGTCGACAAGAAGTATACAGTAAAGGTTTGTGATTTTGGTCTCTCCCGCTTAAAGGCACGCACATTTCTTTCATCAAAATCCGCGGCTGGAACACCTGAGTGGATGGCACCAGAAGTACTACGTGATGAGCCCTCAAATGAAAAATCAGATGTTTACAGCTTTGGAGTGATTTTGTGGGAGTTGGCAACTTTGCAACAGCCATGGTGTAATCTAAACCCAGCTCAGGTTGTTGCAGCTGTTGGATTCAAGTGCAAAAGGCTTGAAATCCCACGTAATGTAAATCCCAAATTGGCTACCTTAATAGTGGCTTGCTGGGCCGATGAGCCGTGGAAACGTCCATCTTTCTCCAGCATAATGGAAACCTTGAAGCCAATGACTAAACAAGCACCATCTCAACAAGGCCATGCAGACACACTCTCGATGAATCCCTTAGAGGAGGGCGATTCGGTATCTCCAATTGGAGCGAATTCTTCTTCTGCTCAGTCGGATTCTGATGCTCCTGGAGTTTCTTCTGATCCTGAATTGATGATGAGCATTGGGTTTTCTTCGTCTCCGACTGACGGAGGCTCTTGGACTGAAAACCCAATGCCATCTTCTTCTGCACACAACCTGTCTGACGTTATACCGAAACCAGACAAAGGACCGTCGGATCCATTTTCCATGTGGGGTTCGGGTACCGATGTGCCTCAACCTCTAGAAGGCCTTCATGGTCAGCTAGTTCCGCCATTTCTGTGGAAGACCTTTGATCTTGTTGAGGATCCTGCGCTTGATCCGATTGTGTCTTGGGGTTCAGCAGGGCAGAGTTTTGTGGTTTGGGATCCTGTGGAGTTTTCTAGAGTGATTCTTCCATCTAATTTCAAGCACAACAACTTCTCCAGTTTTGTCAGACAGCTAAATACTTATGTGGGCTTGAAGAAATGCTCCCCTCCCTGTGTGAAGGGGACTGAGGACTTCCATCTCCAGCAGGGGTTCCGCAAGATTGATGCAGACAAGTGGGAATTTGCAAACGATGCCTTCCAACGAGGGAAGAGACACTTGTTGAAGAACATTCAGAGGCGAAAATCACCTCATTCTCAGCAGATTGGAAGTTTGATAGGGCCATCTACTGGACCAGGGAAGTCTGGATTGGAAGATGAGATTGGGAGGTTAAAGAAAGAGAGGAGCATGTTAATGCAGGAGGTTGTTGAATTGCAGCAGGAGCAGAAGGGAACTGCCCAGCATGTGAAGACGGTGAATCGACGCCTCCAATCGGCCGAGCAGAAGCAGAAGCAGATGATTTCCTTTTTGGCAAAGTTGCTTCAAAATCCTGAGTTTTTATTCCGCTTGCAGAAGAAGAAGGAACAGAGAGATATTGATTCCCCAAGGATGAAACGGAAATTTGTTAAGCAGCATCAACACGAAACCGATGGTTTTACGCCATTCATGGAAGGGCAGATTGTGAAATATCAACCGGATTGGGGAAGTCTCGCCACACCGGAACTGAATCCAAGCCTGCTTGAAGGACCTTCTGCTTACCTTCTGCAGGGAGTGTCTGGAGATTTGGGATCAATTCCAGAAAGCATGTCCAATTTTCAATATGAGAATGATCCATCTAGGGATGTAATTACGTCTGAGGAATTAGCATTCCATCATGGAATTGTAAAACCAACAGAGCTGAGTGTAGAGCCTTCAAACATGTCAATGGAGGATCAACATTCCAAGGGAAAGGCTATTGGGAGTCCCTCACAAGATGTCAATCCTGACTACTTTGTCTCTTTGGCAGAAAGTATTCAACAGTTCTCACACCTTGGAACTGGAAATGTCATTAAACCAGAAGAAATTTGGAGCACGGGTTTGAATGTCAATACTGGCACGTCCAGTTCAAACACCGAGTTGTGGAGCAATCCAGTCGATTTCGAGGATCCATTTTTGCAAGGTTCTAGCAGATTGTCGCCATTCTGGGACATAGGTTCGCTGCAGGCTGGAGATTCACACACGACTACGTGGTCAGCTTCTGGCTTCCCATTTGATGATCCAGATAATCGAGCTTGCCCCGAAAAAACAGACGACTCTGAGGATGAATAA | 4203 | 45.54 | MEMPGRRLNYTLLSQIPDDQNSGGPVRASSSLIELSSGEWKNDKRKLERGLDWEAGGDHRASQQPQVNWIGNMYSAFGLQRQSSGSSFGESSISGEYYALTPSTTVANETDDVLRIVGDSRAQVAGTGGCFGKSWAQHTEESYQLQLALALRLSSDATCADDPNFLNPFQDDSALRRSISSAEAVSHRFWVNGCLSYFDKIPDGFYLIHGMDPYVWTLCTSLPDNDRMPSIESLKSVDPSTDSSIEVVLIDQRTDPNLKDLQNRVRSISCSSITTKEVVDLLAKLVCRSFGGSVSGEDVLVPSWKECSNNLKETLGSVVVPLGALSVGLCRHRALLFKVLADTIDLPCRVAKGCKYCSCHDFSSCLVQFGFDKEYLVDLIGNPGCLYEPDSLLNGPSSILISSPLRFPRLKPVEAAIDFRSLAKQYFADCQLLNVVFDECSSEVTMDGEDGALPLYPEQFDRKFTNRSNQMLVTGVHDEKSILLHGKTSQPNSQDGDFQRFKPLQPTILVEDPIPLKYSRRNVQSPFDMSQPMMDFTMDVRFAQGGQLIPNTRSKTLPLGAEDLDIPWEDLVLKERIGAGHSECITGLISGSFGTVHRADWHGSEVAVKILTEQDFHPERVNEFLREVAIMKSLRHPNIVLFMGAVTKPPNLSIVTEYLSRGSLYRLLHKSGVKDIDETRRINMAYDVAKGMNYLHRRDPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKARTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWCNLNPAQVVAAVGFKCKRLEIPRNVNPKLATLIVACWADEPWKRPSFSSIMETLKPMTKQAPSQQGHADTLSMNPLEEGDSVSPIGANSSSAQSDSDAPGVSSDPELMMSIGFSSSPTDGGSWTENPMPSSSAHNLSDVIPKPDKGPSDPFSMWGSGTDVPQPLEGLHGQLVPPFLWKTFDLVEDPALDPIVSWGSAGQSFVVWDPVEFSRVILPSNFKHNNFSSFVRQLNTYVGLKKCSPPCVKGTEDFHLQQGFRKIDADKWEFANDAFQRGKRHLLKNIQRRKSPHSQQIGSLIGPSTGPGKSGLEDEIGRLKKERSMLMQEVVELQQEQKGTAQHVKTVNRRLQSAEQKQKQMISFLAKLLQNPEFLFRLQKKKEQRDIDSPRMKRKFVKQHQHETDGFTPFMEGQIVKYQPDWGSLATPELNPSLLEGPSAYLLQGVSGDLGSIPESMSNFQYENDPSRDVITSEELAFHHGIVKPTELSVEPSNMSMEDQHSKGKAIGSPSQDVNPDYFVSLAESIQQFSHLGTGNVIKPEEIWSTGLNVNTGTSSSNTELWSNPVDFEDPFLQGSSRLSPFWDIGSLQAGDSHTTTWSASGFPFDDPDNRACPEKTDDSEDE | 1400 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2054179 | 2067031 | + | CmaCh06G004450.1 | Cma06g00445 | 295999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00445 | 1400 | Pfam | Protein tyrosine and serine/threonine kinase | 588 | 835 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | SMART | hsfneu3 | 952 | 1066 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00445 | 1400 | PANTHER | MAP KINASE KINASE KINASE-LIKE PROTEIN | 123 | 848 | - | - | |
Cma06g00445 | 1400 | Gene3D | Phosphorylase Kinase; domain 1 | 564 | 660 | - | - | |
Cma06g00445 | 1400 | Gene3D | Transferase(Phosphotransferase) domain 1 | 661 | 849 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 1064 | 1090 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 1066 | 1080 | - | - | |
Cma06g00445 | 1400 | ProSiteProfiles | Protein kinase domain profile. | 582 | 839 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 837 | 852 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 864 | 881 | - | - | |
Cma06g00445 | 1400 | PRINTS | Heat shock factor (HSF) domain signature | 956 | 979 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00445 | 1400 | PRINTS | Heat shock factor (HSF) domain signature | 1007 | 1019 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00445 | 1400 | PRINTS | Heat shock factor (HSF) domain signature | 994 | 1006 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00445 | 1400 | PANTHER | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED | 123 | 848 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 837 | 937 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 889 | 918 | - | - | |
Cma06g00445 | 1400 | CDD | STKc_MAP3K-like | 590 | 835 | - | - | |
Cma06g00445 | 1400 | Gene3D | - | 949 | 1067 | IPR036388 | - | |
Cma06g00445 | 1400 | SUPERFAMILY | Protein kinase-like (PK-like) | 585 | 835 | IPR011009 | - | |
Cma06g00445 | 1400 | Pfam | HSF-type DNA-binding | 956 | 1066 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Cma06g00445 | 1400 | SUPERFAMILY | Winged helix DNA-binding domain | 953 | 1066 | IPR036390 | - | |
Cma06g00445 | 1400 | Coils | Coil | 1086 | 1113 | - | - | |
Cma06g00445 | 1400 | MobiDBLite | consensus disorder prediction | 1373 | 1400 | - | - | |
Cma06g00445 | 1400 | PRINTS | Tyrosine kinase catalytic domain signature | 656 | 669 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | PRINTS | Tyrosine kinase catalytic domain signature | 696 | 714 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | PRINTS | Tyrosine kinase catalytic domain signature | 806 | 828 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | PRINTS | Tyrosine kinase catalytic domain signature | 762 | 784 | IPR001245 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 702 | 714 | IPR008271 | GO:0004672|GO:0006468 | |
Cma06g00445 | 1400 | Pfam | Ethylene-responsive protein kinase Le-CTR1 | 182 | 386 | - | - | |
Cma06g00445 | 1400 | SMART | serkin_6 | 582 | 839 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g00445 | Cma14g00279 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01473 | Cma-Chr1:10384629 | Cma06g00445 | Cma-Chr6:2054179 | 0 | dispersed | |
Cma06g00445 | Cma-Chr6:2054179 | Cma09g00596 | Cma-Chr9:2765119 | 0 | dispersed | |
Cma17g01203 | Cma-Chr17:8307360 | Cma06g00445 | Cma-Chr6:2054179 | 1.83E-58 | dispersed | |
Cma19g00021 | Cma-Chr19:123363 | Cma06g00445 | Cma-Chr6:2054179 | 2.74E-59 | dispersed | |
Cma14g00279 | Cma-Chr14:1176406 | Cma06g00445 | Cma-Chr6:2054179 | 0 | wgd | |
Cma03g01176 | Cma-Chr3:7858266 | Cma06g00445 | Cma-Chr6:2054179 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
35171 | PF07714 | PK_Tyr_Ser-Thr | 8.10E-68 | CL0016 | Cma | TF | |
68632 | PF07714 | PK_Tyr_Ser-Thr | 8.10E-68 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00445 | K14510 | - | csv:101208452 | 1459.12 |