Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00447 ATGGAAATGGAGAGCTCGCGGAGACCTTTCGATCGAACGAGGGAACCGGGTTTGAAGAAGCAGCGACTGGCCGATGAGGCTGAGCGCGGTGGGAACATTAATGGCCGGCCGTTTCCGCAGAGACCAATTGGTTCGGGGACCAATATTGTGCAACCCAGATTTCGAGCAAGTGATAGAGATTCGGGAAGCAGTGATTCTGGTCGAGGGGGGTATCAGCTTCAACCACTGCAGCATCAGGAGCTTGTCAGCCAATACAGAACAGCCCTTGCTGAGCTGACTTTCAATTCGAAACCAATCATCACGAATTTGACCATAATCGCGGGTGAAAATCTCCAGGCTGCAAAAGCCATCTCTGCCACCGTTTGCGCCAACATTCTCGAGGTTTCCAGTGAGCAGAAGCTACCATCACTTTATCTATTGGACAGTATTGTGAAGAATATTGGAAGAGACTACATAAAATACTTTGCAGCAAAGCTGCCCGAGGTATTCTGCAAAGCTTATAGGCAAGTTGACTCTCCTGTACATACAAGTATGAGACATCTTTTTGGCACCTGGAAAGGAGTGTTTCCTCCTCAAACACTGCAGGTTATCGAGAAAGAACTTGGTTTCATAACCAACAGTGGTTCTTCTTCTGGGACAATATCCTCAAAGCCAGAATTGCAGTCACAACGTCCACCCCATAGTATCCATGTAAATCCCAAGTATATAGAGAGACAACGGCTTCAACAGTCGGGCAGGGTGAAAGGAATGACTAGTGATGCTACTATTGCAACTACAAATGTAACTCAGGATGTTGCCCAAGCCAAAATTAGCACTGGACGTCCATGGGCAGATGCTTCAATTAAAGTGCATGACATTCAGCGTCCACTTAGAGATGCACCAAATGATATGGCACAAGAGAAGAACATCACGGCTGCATATGCAGATTACGAATATGGTTCCGATCTTTCAAGGACTCCAGGTATCGGAAGAAGGGCTGTTGATGAAGGGCGAGACAAACCTTGGTCTACAACTGGTAGCAATTTGGCAGAGAAGGTATCTGGCCAAAGAAATGGGTTCAACATCAAGCTTGGATATGACAATTATCCTGCACCCAGGTCTGCAAACACTGGTGCACGTCTACTGCCCACGCAAAATTTTTCAAGCAGCAGCAGCAGCAACCGAGGATTGTCTACTAACTGGAAGAACTCTGAGGAAGAGGAGTTTATGTGGGGTGAAATGAACTCTATGTTGACAGGTCATGGTGCATCTGCCATTGCCAATAGCATTGGGAAAGATCAATGGACTCCTGAGGATTCAGATAATTCGGGTATTGAAAATAAGCTATTAAGTTTACGAGATACTGGGGGAAGTGTTGATAGAGAAGCTTCCAGTGATTCACAATCATCTGAGCAGAGAGAACTGGGGGATTCTGGACAGCAAAGGTCATCAATGTGGCAAGTGCAGGAGCCATTATCTCTGGATGGGCTGAGAGGCGGGATTCCTAAAAAGAATTCAGCTCAGTCAGGAGGATATGGTGCCACTCTTACTGCCCTGTCAGGTGGTAACTCTTCTGTGGATCAAATGGGAGGTCGATCACAAATTACATCGTCAAATATTGGAGCTTCAGGACATGAATTTCTGAACAAGGGAGGTTCAGGGTCCATTGGGACTGCAGGCCAGCAAATATTTCCATCACGAAATGTTGCATTCGCATCTGGACAGCCACCCTTGCATCAACGTCCCCCTTCACCATTGTCAGTGGATCATATTCCTCATCAAATGCCCAACCATAAAACTTCTTCATTTTCTAATCTTGACCCACGTAAAAGGCATTTACAGGATGCTTCCCTTGGTCGACATCCCAACGTTCAGTCAGATAACCTTAAAAAACCACAGCCTCAGGACCGTCAAGCTGCAGCCTCCTCCATACCTACTTCTCAACCCAGGCAGCCGTTCTCTTTATCTGAGTCACTAAAACCTGATGTCAGGCAGTCCGAACTTTCAAGACAGCATGCAGTATCTATTCCAGGCACTGATTTTGGACCTCCTTCATCAGCTGGGACAGTTCCAGTTCGTTTACCTGCAGAAATTTTGGGAGAGACAAGCACTAGTAGTTTGTTGGCTGCTGTAATGAAGAGTGGAATTTTTTCCAACCATTCAATAGCCAGTAGCATGCAGCAGAATATCAGCTTCCAAGATGCAGGAAATATGCAACCCCATTCAAACGTCAAACCTCCACTACCAAGCCGGTCTTCTCCTGCCCATACTCAGACGACATTCTCAGAGCCAAAGACTGCGGGAGAATCTTCATTAGGTCCTCTTGAAAGCCCATCAGCTCTGGTTAAGCTATCTCAAACTAAGGTAGAAGATACTCCGTTGCCATCTGATCCACCTCCACCCTCATCTCCTATGAATAGTGCATCCACGGCAACTTCAAATGTGGTAAACGACTCTTCTACCCCAATTTCTAACCTTTTGAGCTCATTGGTTGCAAAGGGCCTTATATCTGCTTCAAAAGGAGAAATAACAAATAGTACAACTTCCCAAATGCCTGCACAGCCTGAAAATTTGAAGTTAGGTGATGCTGTGACATGTTCTGTACCAGTTCCTTCCATCCCCGTTACTTCTTCCAGTCAATCATCTACGATACTTGAATCATCTACAAAAGCTGCTGCTAAGAGCTCCACTAGTCCACCTCCATTTGCCACAACTGAGATAACCAACATCATAGGCTTTGAATTTAGTTCGCATGTTATTCGAAAATTTCAGCCATCTGTGATCAGTGGACTCTTTGACGATATTCCATATCAATGTAAGATCTGTGGTCTGAGACTGAAACTTGAAGAACAGTTGGATACACACTTGCAGTGGCACACGTTAAGAACTGAGGCAAACAATTCAAATAAGACACCAAGAAGATGGTATCCAAGTTCAGATGATTGGATTTCTGGAAATGATATACTCTTACATGATGCTGCCACTTCTCCGGACAGGTGTGACATGATGGAAGAAGTTAATGAGCCAATGGTACCTGCAGATGAAGATCATTTGGTCTGTGTTTTATGTGGTGAACTTTTTGAAGATTTTTATAGTCATGACTTGGATAAGTGGATGTTCAAAGGAGCAATGTATATCACCATCCCATCAGCGGTTAGTGAGATAGGAAGCACAAATGAACAAGTTGCTAGAGGACCCATTGTTCACCCAAAATGTATAACTGAAAGTGCACTACATGACTTGGGACTGGCAACTGATATTAAGATGGTAATGTTCTTGATTCTTTATACTTCTGCAGGACTTGATTTGGGTTTACAATCGTCCAATGGTCTCCCTGATGATTTTCATGCGTTGAAATGGATGTATGATGCTTCCACTGCAAAACGTCATAGAGGAACAACTCTGGTGGGACGTCCTGCTCATGCAATCAGCGGGGTTACGAAAAGGGAGTATGAGTACGAGTTCTTCGCTTTTGATAGTTTTGTTGAGTGCCAAAAAAGATTATAA 3486 44.69 MEMESSRRPFDRTREPGLKKQRLADEAERGGNINGRPFPQRPIGSGTNIVQPRFRASDRDSGSSDSGRGGYQLQPLQHQELVSQYRTALAELTFNSKPIITNLTIIAGENLQAAKAISATVCANILEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAAKLPEVFCKAYRQVDSPVHTSMRHLFGTWKGVFPPQTLQVIEKELGFITNSGSSSGTISSKPELQSQRPPHSIHVNPKYIERQRLQQSGRVKGMTSDATIATTNVTQDVAQAKISTGRPWADASIKVHDIQRPLRDAPNDMAQEKNITAAYADYEYGSDLSRTPGIGRRAVDEGRDKPWSTTGSNLAEKVSGQRNGFNIKLGYDNYPAPRSANTGARLLPTQNFSSSSSSNRGLSTNWKNSEEEEFMWGEMNSMLTGHGASAIANSIGKDQWTPEDSDNSGIENKLLSLRDTGGSVDREASSDSQSSEQRELGDSGQQRSSMWQVQEPLSLDGLRGGIPKKNSAQSGGYGATLTALSGGNSSVDQMGGRSQITSSNIGASGHEFLNKGGSGSIGTAGQQIFPSRNVAFASGQPPLHQRPPSPLSVDHIPHQMPNHKTSSFSNLDPRKRHLQDASLGRHPNVQSDNLKKPQPQDRQAAASSIPTSQPRQPFSLSESLKPDVRQSELSRQHAVSIPGTDFGPPSSAGTVPVRLPAEILGETSTSSLLAAVMKSGIFSNHSIASSMQQNISFQDAGNMQPHSNVKPPLPSRSSPAHTQTTFSEPKTAGESSLGPLESPSALVKLSQTKVEDTPLPSDPPPPSSPMNSASTATSNVVNDSSTPISNLLSSLVAKGLISASKGEITNSTTSQMPAQPENLKLGDAVTCSVPVPSIPVTSSSQSSTILESSTKAAAKSSTSPPPFATTEITNIIGFEFSSHVIRKFQPSVISGLFDDIPYQCKICGLRLKLEEQLDTHLQWHTLRTEANNSNKTPRRWYPSSDDWISGNDILLHDAATSPDRCDMMEEVNEPMVPADEDHLVCVLCGELFEDFYSHDLDKWMFKGAMYITIPSAVSEIGSTNEQVARGPIVHPKCITESALHDLGLATDIKMVMFLILYTSAGLDLGLQSSNGLPDDFHALKWMYDASTAKRHRGTTLVGRPAHAISGVTKREYEYEFFAFDSFVECQKRL 1161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2070293 2079132 + CmaCh06G004470.1 Cma06g00447 296001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00447 1161 MobiDBLite consensus disorder prediction 727 760 - -
Cma06g00447 1161 Pfam CID domain 87 195 IPR006569 -
Cma06g00447 1161 ProSiteProfiles Zinc finger C2H2 type domain profile. 930 957 IPR013087 -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 208 228 - -
Cma06g00447 1161 Gene3D - 73 202 IPR008942 -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 454 478 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 727 811 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 321 341 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 445 478 - -
Cma06g00447 1161 CDD CID_Pcf11 82 194 - -
Cma06g00447 1161 PANTHER RNA POLYMERASE II-BINDING DOMAIN PROTEIN 3 1073 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 371 394 - -
Cma06g00447 1161 ProSitePatterns Zinc finger C2H2 type domain signature. 932 952 IPR013087 -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 368 394 - -
Cma06g00447 1161 SUPERFAMILY ENTH/VHS domain 78 207 IPR008942 -
Cma06g00447 1161 ProSiteProfiles CID domain profile. 77 205 IPR006569 -
Cma06g00447 1161 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 3 1073 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Cma06g00447 1161 MobiDBLite consensus disorder prediction 208 229 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 564 682 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 1 71 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 612 666 - -
Cma06g00447 1161 MobiDBLite consensus disorder prediction 1 29 - -
Cma06g00447 1161 SMART 558neu5 80 202 IPR006569 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00447 Cma14g00281 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00447 Cma-Chr6:2070293 Cma18g00244 Cma-Chr18:1286147 1.80E-30 dispersed
Cma14g00281 Cma-Chr14:1192866 Cma06g00447 Cma-Chr6:2070293 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00447 K14400 - csv:101223169 1646.71