Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00453 ATGGATGATCAATATTCCCTTTCCGATCTCCGCCATCTCATCACTGCCCCGCCTCGCTCTCATTTCCTTTCTTCCTCAATTCCCCACCACGATCTTGCTTCTACCGCCTTTCGCCACCACCATACCCCCTATGATCTCATTCGCTCTCAACCCACCACCGTTCTTGGTTCCACTTCCCCTACTAGCTTCGATGCTCAAACCACCACTGCTCGGTGGCCTCGCCAAGAGACTCTCACTCTCTTGGATGTCAGATCTCGCCTCGATTCTAAGTTTAAAGAAGCTAACCAAAAAGGACCACTTTGGGATGAAGTTTCTAGAATTATGGCTGAGGAACACAATTATCAAAGAAGTGGAAAGAAATGCAGAGAAAAGTTTGAGAATTTATATAAATATTACAAAAAGACAAAGGATGGCAAAGCTGGACGACAAGATGGCAAAAACTACAGATTCTTCAGGCAGCTTGAAGCTCTTTATGGTGAAACCAGCAATGCCACTTCACTTCCAGACTCCCATTTTGTTGGAGATGGCAACCTTATATTCCAACCAGATGGGACTAATAATCCAACTTCCGGTCACATGAGCTACGATGCTCAGCTGAAGCACTACTGCGACAGTCTCAGCCTCTCGAACACGTCCGAGTTTGAAACCTCGGCGTCGTCTGATGGTAATGACGAGTTTGGTTCGGTCAATGATTCGGTGGAGAAGAGGAGGAAGAGGCGAGCTGGGAAATGCTGGAAGGTGAAGATCAAGCAGTTTATTGACTCGCAAATGAGGAAGCTAATTGATAAGCAAGAAGCTGGGTTGGAGAAGCTCATGAAAACTCTTGAACAAAAGGAGAAGGAAAGAATGGTATGGGAAGAGGAATGGAGGAAACAAGAAGTGTCAAGAATTGAGAGTGAGAGAAGCTTTTGGGCAAAGGAGAGAGCATGGATAGAAGCTAGAGATGCAGCGTTAATGGAGGCATTACAAAAGCTAACAGGCAAAGAGTTAATCACAGCGGAGCCTCATCCAAATGAAGATGGTAGTGAGATACTCAACAATTACCAAACAAAAACAATCGATCAAAACAACAAGAAACGCAAGGACAATTCAAGATCACCCACCACAACCTACAATCTTTACTTCCAAACTGATTCCTCGGTCTACGGCGGAGGTGGCCGTGGCCGTGGCCGTGGCCGTGGCACCGAGATGAAAGAACAAAGTCCGAACAGCTCGAACGCCGGGGGCAGTGGCAGTGGCAGCCAAGTGGTGCAAGATAGCTGCTTTTTCTTGATGGGTGAAGGAGATCAATCTCAATCTGTTCCGCAATATTGCAATAATTGA 1323 46.33 MDDQYSLSDLRHLITAPPRSHFLSSSIPHHDLASTAFRHHHTPYDLIRSQPTTVLGSTSPTSFDAQTTTARWPRQETLTLLDVRSRLDSKFKEANQKGPLWDEVSRIMAEEHNYQRSGKKCREKFENLYKYYKKTKDGKAGRQDGKNYRFFRQLEALYGETSNATSLPDSHFVGDGNLIFQPDGTNNPTSGHMSYDAQLKHYCDSLSLSNTSEFETSASSDGNDEFGSVNDSVEKRRKRRAGKCWKVKIKQFIDSQMRKLIDKQEAGLEKLMKTLEQKEKERMVWEEEWRKQEVSRIESERSFWAKERAWIEARDAALMEALQKLTGKELITAEPHPNEDGSEILNNYQTKTIDQNNKKRKDNSRSPTTTYNLYFQTDSSVYGGGGRGRGRGRGTEMKEQSPNSSNAGGSGSGSQVVQDSCFFLMGEGDQSQSVPQYCNN 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2095169 2098566 - CmaCh06G004530.1 Cma06g00453 296007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00453 440 MobiDBLite consensus disorder prediction 397 415 - -
Cma06g00453 440 PANTHER - 59 337 - -
Cma06g00453 440 Coils Coil 261 288 - -
Cma06g00453 440 Pfam Myb/SANT-like DNA-binding domain 71 157 IPR044822 -
Cma06g00453 440 ProSiteProfiles Myb-like domain profile. 64 129 IPR001005 -
Cma06g00453 440 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 59 337 - -
Cma06g00453 440 PANTHER TRIHELIX TRANSCRIPTION FACTOR PTL 343 433 - -
Cma06g00453 440 CDD GT1 71 136 - -
Cma06g00453 440 Gene3D - 72 134 - -
Cma06g00453 440 PANTHER - 343 433 - -
Cma06g00453 440 MobiDBLite consensus disorder prediction 349 415 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00969 Cma06g00453 CCT
Cma06g00453 Cma15g01346 CCT
Cma06g00453 Cma14g00286 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00453 Cma-Chr6:2095169 Cma18g00935 Cma-Chr18:8020325 1.36E-77 dispersed
Cma14g00286 Cma-Chr14:1217842 Cma06g00453 Cma-Chr6:2095169 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35172 PF13837 Myb_DNA-bind_4 3.40E-19 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00453 - - cmax:111498734 847.81