Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00454 GTCTCCTCCAATGGCTGCCACCCCAACCCTCATCAGAACTTAGTTCATCTCCAACTGGTCTGCACTCATCTCCTCCGCCATTTCCCCCTCCCTTTTTCTTCCTCCATAAATGCCTTCTCTCCATCTCTTCAACCCCACCGCCCCTCCCCTCCTCCTCCTCACTTTTCCCTTCAATTCACCTCCTCCATGGCTACTTCCGGCCGCCACCCCGTTTACCGCGGCGTTCGACGCCGCAACACAGGCAAATGGGTGTCGGAAATTCGCGAGCCCCGGAAGCCAAATCGGATTTGGTTGGGAACCTTCCCGACAGCTGAAATGGCGGCTGTGGCTTATGACGTTGCTGCCCTTGCTCTCAAGGGCCACGACACCCACCTCAATTTCCCCAATTCCGCGTCCTCTCTCCCTGTTCCTGCTTCACGTTCACCCTCTGATATTCAGGCTGCAGCCGCCTCTGCCGCCGCTGCGCTTGGTGCCGCAGCAGCCGCCATCGAGGCAAGAAGTGGTTTTCACGGTGGCCGTAGTAATGATCCAGGGGAAGTGCGAAATCATTTCATGGACGAGGACTTGATTTTTGATATGCCTAATATTCTAATGAATATGGCTGAAGGAATGCTTCTTAGCCCTCCCCGTTTCAATAATCATGGTGGTGATGACGACGGAGCCGATCATGATAATGAGAAGTTTGATTCAAAGTGGACTTTC 702 53.99 VSSNGCHPNPHQNLVHLQLVCTHLLRHFPLPFSSSINAFSPSLQPHRPSPPPPHFSLQFTSSMATSGRHPVYRGVRRRNTGKWVSEIREPRKPNRIWLGTFPTAEMAAVAYDVAALALKGHDTHLNFPNSASSLPVPASRSPSDIQAAAASAAAALGAAAAAIEARSGFHGGRSNDPGEVRNHFMDEDLIFDMPNILMNMAEGMLLSPPRFNNHGGDDDGADHDNEKFDSKWTF 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2105391 2106363 + CmaCh06G004540.1 Cma06g00454 296008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00454 234 Pfam AP2 domain 70 121 IPR001471 GO:0003700|GO:0006355
Cma06g00454 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 60 226 - -
Cma06g00454 234 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Cma06g00454 234 SUPERFAMILY DNA-binding domain 71 130 IPR016177 GO:0003677
Cma06g00454 234 CDD AP2 72 130 IPR001471 GO:0003700|GO:0006355
Cma06g00454 234 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 60 226 - -
Cma06g00454 234 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Cma06g00454 234 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Cma06g00454 234 MobiDBLite consensus disorder prediction 215 234 - -
Cma06g00454 234 MobiDBLite consensus disorder prediction 209 234 - -
Cma06g00454 234 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Cma06g00454 234 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00454 Cma14g00288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00454 Cma-Chr6:2105391 Cma16g00151 Cma-Chr16:665860 1.65E-39 dispersed
Cma14g00287 Cma-Chr14:1229251 Cma06g00454 Cma-Chr6:2105391 2.47E-68 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35173 PF00847 AP2 5.70E-13 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00454 - - csv:101203380 221.476