Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00497 ATGTCCTTAAACCACTTCTCTTCGGACTGCCATCTCCACCACCCCAAATCCTCTGCCTCCGCCGTCGACCACCACCTCATCCACCACCACCACAAGCACCCCATGTTCGAAAAGCCCTTGACTCCCAGCGACGTTGGCAAGCTCAACCGCCTCGTCATCCCCAAGCAATATGCTGAAAAGTATTTTCCACTTTCCCCCGGCGGCGACACGGCTGACAAGGGCTTGCTTCTTAGCTTCGAAGATGAGTCCGGTAAGATGTGGCGCTTCCGTTACTCGTATTGGAATAGTAGCCAGAGCTATGTGCTCACTAAAGGGTGGACCCGCTTTGTCAAAGAGAAGCGCCTTGACGCCGGTGATGTCGTCGTCTTTGAACGCCACCGCCGTGATGGGGATAGGTTGTTCATTGGCTGGAAGCGGCGCTCGCCGGTGTCTACGGCGGAGACGGCGGCGGCAACTAGAATCTTCTGTTCTTCAAACCCATATCCTTCTCATCATCATCATAATCATCTTCCTTCACCGCCATACCAATCTTCTGATTGTCCTCGTGCAGAGTCCTCTGTTCAGAGTCAAACAGTGTCGGTTGGGAATTCAAAGATAGTGCGTCTGTTCGGGGTGGACTTGGAGTGCCAAACCGACGTGTCGGAACCTGAACAGCCTTCGACTATCGGTGGCGGGTCGGGTCTATCGGGTCAAGATCCAACCCGTCACAGCTTCTACACACACTGA 726 54.13 MSLNHFSSDCHLHHPKSSASAVDHHLIHHHHKHPMFEKPLTPSDVGKLNRLVIPKQYAEKYFPLSPGGDTADKGLLLSFEDESGKMWRFRYSYWNSSQSYVLTKGWTRFVKEKRLDAGDVVVFERHRRDGDRLFIGWKRRSPVSTAETAAATRIFCSSNPYPSHHHHNHLPSPPYQSSDCPRAESSVQSQTVSVGNSKIVRLFGVDLECQTDVSEPEQPSTIGGGSGLSGQDPTRHSFYTH 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2341282 2343357 + CmaCh06G004970.1 Cma06g00497 296051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00497 241 Pfam B3 DNA binding domain 36 140 IPR003340 GO:0003677
Cma06g00497 241 CDD B3_DNA 34 130 IPR003340 GO:0003677
Cma06g00497 241 MobiDBLite consensus disorder prediction 212 241 - -
Cma06g00497 241 Gene3D - 27 151 IPR015300 -
Cma06g00497 241 MobiDBLite consensus disorder prediction 213 241 - -
Cma06g00497 241 ProSiteProfiles B3 DNA-binding domain profile. 36 141 IPR003340 GO:0003677
Cma06g00497 241 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 20 219 IPR044800 GO:0003700
Cma06g00497 241 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 20 219 - -
Cma06g00497 241 SUPERFAMILY DNA-binding pseudobarrel domain 31 141 IPR015300 -
Cma06g00497 241 SMART B3_2 36 141 IPR003340 GO:0003677
Cma06g00497 241 MobiDBLite consensus disorder prediction 162 191 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00497 Cma16g00597 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00497 Cma-Chr6:2341282 Cma16g00597 Cma-Chr16:3085688 5.78E-49 dispersed
Cma14g00333 Cma-Chr14:1480443 Cma06g00497 Cma-Chr6:2341282 1.03E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35177 PF02362 B3 7.80E-31 CL0405 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00497 - - bhj:120091802 342.043