Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00526 ATGGCGACGTACCTTCATGCCAATTCTGAGTTTCAATCTGCTGCTGATGCTGGCCTTCAAACCCTTGTCTTAATGAATCCCGGCTATGTTCAATTCTCCGACACCCCACCGCCGCCTTCATCGCCGCCTCCTTCACACCCTAATCTTGTTTTCTTCAATTCTGCTACGCCTGCTAATGCCTACTCTGCACAGACTCTGCCTCACCCGCCTTCTCATGCTCAACAGTTTGTCGGCATCCCACTACCGTCGACGACAACCGCTTCTCCGACATCTCAAGACCATAATTTGTATTCCTTCAATACCCACCATGATATCTCCGCCTTACATGGCTTTGTTCCTCGTGTTCAGTATGATATTTGGAAACCAATTAACCCATCCACGACGGCGCGTGAGACTTCACGCGCTCAACAAGGTTTGTCTTTGAGTCTGTCTTCACAACAGGGTTTTGGGTCGAGAGAGATTCAATCGCAAACCCATCAGGCGGTTTCCGGCGAGGAGAACGTTCGGATCTCCGGTGGATCGTCTTCCTCTGCTTCCGGTATCACCAATGGCGCGGCTGGAATTCAGGGCGTTTTAATTAGTTCTAAGTATCTCAAGGCTGCTGTAGAACTTCTGGATGAGGTTGTTAATGTAACCCAAAACGGGATTAAGAACGAATCGTCTCCTAAAAAGGCCGCCGGAAATCAAAACAAGATGAATGGAGATGCATCTGCCGCCGCCACAACTGCCGATGGTTCTTTCGAAGAAGAAGGCGACGGGAAACGCGCCGCCGATTTAACGACCGCCGAGAGACAAGAAATTCAAATGAAGAAAGAAAAGCTTATCAGTATGCTCGATGAGGTAGAGCAGCGGTACAGACACTACCACCACCAAATGAAGATAGTGATATCCACATTTGAAAAGGCGGCCGGAGCTGGGTCGGCAAGAACCTACACCGCGCTGGCACTTCAGACAATTTCGAAGCAATTCCGGTGCTTAAAAGACGCAATCACCGGCCAAATCAAAGCGGCGAACAAGAGTTTAGGAGAAGAAGAATACAACGGAAGAAAAATGGAAGGTTCCCGGTTGAAATTCGTCGATAACCATCTCCGGCAACAACGAGCTCTGCAACAATTGGGTATGATCCAACACAATGCTTGGAGACCCCAACGAGGCTTACCGGAGCGATCCGTTTCGATTCTTCGCGCTTGGCTGTTCGAACACTTTCTCCACCCTTACCCTAAAGATTCAGACAAACACATGCTCGCTAAGCAAACAGGGCTCACCAGAGGCCAGGTTTCGAATTGGTTCATAAATGCGAGAGTTCGACTGTGGAAGCCAATGGTGGAAGAGATGTATTTGGAGGAAGTCAAGGAACAAGAACAGAACGGCGGTGGCGGATTGGCACCGTCGACGGCTGCGGAAAAAAGCAACGACGATTCAGATTCAAAAAGCCCAAATTCAAAACAAGAAAACTCTCCAAACCAAAACGTTCATCCTTCAGTCTCAATCTCAACGTCCTCCGATGGAAATGTTCGAAACCCATCTGGGTTTACCCTCATCGGAACCTCATCGGAGCTCGACGGAATCACTCAACGAAGCCCCAAGAAACAGAGAGGCACCGAAATCCTCTATTCCTCAAACAACAACAACAACAACAACAACGTCCAGTTCATAAACATGGACATCAAACTCCGAGAAGAAGAACAACAAAATCAAAATCTCCATCATCTTCCAATGAAATTCGACGAGGAAAGACAAAACAGAGAAGGTTATTCATTTCTAGGCCAAACCCATTTCAACATGGCCGGATTCGGGCAATACCCAATCGGAGAAATCAGCCGATTCGACGCCGATCAGTTCACTCCAAGATTCTCCGGCAACAATGGCGTCTCATTGAGTCTAGGCCTTCCCCATGGCGAAAATCTCTCCGTAAACGCAGGCACCCACCAAGCCTTTCTCCCCAATCAAAGCATCCATTTAGGAAGAAGAACTGAAATGGGAAAACCCACTGATTTTTCCGCCATTAACGCCTCAACACCTCACTCCTCCACTGCATTTGAAACCATCAACATCCAAAATGGCAAGAGGTTTGCAGCTCAGTTACTACCGGACTTCGTGGCCTGA 2106 48.29 MATYLHANSEFQSAADAGLQTLVLMNPGYVQFSDTPPPPSSPPPSHPNLVFFNSATPANAYSAQTLPHPPSHAQQFVGIPLPSTTTASPTSQDHNLYSFNTHHDISALHGFVPRVQYDIWKPINPSTTARETSRAQQGLSLSLSSQQGFGSREIQSQTHQAVSGEENVRISGGSSSSASGITNGAAGIQGVLISSKYLKAAVELLDEVVNVTQNGIKNESSPKKAAGNQNKMNGDASAAATTADGSFEEEGDGKRAADLTTAERQEIQMKKEKLISMLDEVEQRYRHYHHQMKIVISTFEKAAGAGSARTYTALALQTISKQFRCLKDAITGQIKAANKSLGEEEYNGRKMEGSRLKFVDNHLRQQRALQQLGMIQHNAWRPQRGLPERSVSILRAWLFEHFLHPYPKDSDKHMLAKQTGLTRGQVSNWFINARVRLWKPMVEEMYLEEVKEQEQNGGGGLAPSTAAEKSNDDSDSKSPNSKQENSPNQNVHPSVSISTSSDGNVRNPSGFTLIGTSSELDGITQRSPKKQRGTEILYSSNNNNNNNNVQFINMDIKLREEEQQNQNLHHLPMKFDEERQNREGYSFLGQTHFNMAGFGQYPIGEISRFDADQFTPRFSGNNGVSLSLGLPHGENLSVNAGTHQAFLPNQSIHLGRRTEMGKPTDFSAINASTPHSSTAFETINIQNGKRFAAQLLPDFVA 701
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2460707 2464267 + CmaCh06G005260.1 Cma06g00526 296080
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00526 701 ProSiteProfiles 'Homeobox' domain profile. 377 440 IPR001356 GO:0003677
Cma06g00526 701 MobiDBLite consensus disorder prediction 450 542 - -
Cma06g00526 701 Gene3D - 383 445 - -
Cma06g00526 701 MobiDBLite consensus disorder prediction 480 542 - -
Cma06g00526 701 MobiDBLite consensus disorder prediction 217 240 - -
Cma06g00526 701 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 5 6 652 - -
Cma06g00526 701 MobiDBLite consensus disorder prediction 217 257 - -
Cma06g00526 701 SMART prehox3 186 332 IPR006563 -
Cma06g00526 701 MobiDBLite consensus disorder prediction 156 180 - -
Cma06g00526 701 SUPERFAMILY Homeodomain-like 381 446 IPR009057 -
Cma06g00526 701 Pfam Homeobox KN domain 397 436 IPR008422 GO:0003677|GO:0006355
Cma06g00526 701 Coils Coil 264 284 - -
Cma06g00526 701 Pfam Associated with HOX 191 331 IPR006563 -
Cma06g00526 701 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6 652 - -
Cma06g00526 701 CDD homeodomain 380 441 IPR001356 GO:0003677
Cma06g00526 701 SMART HOX_1 380 444 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00526 Cma14g00361 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00100 Cma-Chr5:423448 Cma06g00526 Cma-Chr6:2460707 2.98E-47 dispersed
Cma06g00526 Cma-Chr6:2460707 Cma20g00823 Cma-Chr20:3913634 9.45E-97 dispersed
Cma14g00361 Cma-Chr14:1592554 Cma06g00526 Cma-Chr6:2460707 0 wgd
Cma02g01304 Cma-Chr2:7678031 Cma06g00526 Cma-Chr6:2460707 0 wgd
Cma20g00147 Cma-Chr20:726212 Cma06g00526 Cma-Chr6:2460707 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35180 PF07526 POX 8.90E-47 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00526 - - csv:101208201 1052.74