Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00527 ATGGAAGAAATCGAAGTCCCCAACTACTTCCTCTGCCCAATCTCCCTCCAAATCATGAAAGACCCCGTCACCGTCCCCTCCGGCATCACCTACGACCGCCCCTCCATCGAAACCTGGCTCTTCTCCACCAAAAACGCCTCCTGCCCCATCACCAAGCTCCCCATCCCCGCCGACTCCGATTCCCTCACCCCCAACCACACCCTCCGCCGCTTAATCCAAGCCTGGTGCACTCTCCACTCCCACCATGGCATCGAACGCTTCCCCACTCCCAAGCCCCCCATCAACAAGCCACAAATCCACAAACTCATCTCCTCCTCTTCCTCTACTCCCTCCTCCCTTCTCTCCTGCATTCGCCGCCTCCGTTCCCTCGCTGCCGAATCCGAATCCAACCGCCGATGCATCGAATCCGCCGGCGCCCCTGAGTTTCTAGCCTCTGTTATCATCAATTCCATCTCCGACAACGACAACGAAACCGCCTTGATTTCCTGCCATGAAGCGCTTTCCACTCTCCATAATCTCCGCCTCTCTGATTCCAAGTTGAAGAGCTTGACCGTAAACGCCGAGCTTTTTGATTCGTTGACGAAGGTCATGGAACAGGGGACGTACGAGTCACGAGCGTACGCGGCGTTGCTTTTGAAATCATTACTGGAAGTGGCGGACCCAATGGAGCTGACATTCCTAAAATCAGAACTGTTTGTGGAAATTGTTGGGATCTTGAAGGATCAGACATCGCAGCAGAGTTTGAAAGCGGCATTGGGGATTTTGATTACGGCCTGCACATGGGGGAGGAACAAAGTGAAGGCGGTTGAAGCAGGTGGGGTTGTGGCTTTGGTCGAGATATTACTCTCGGGACCGGAGAGGAGGGTGTCCGAGATGGCGTTGACGGCGATGGATTTGCTATGTGGGTGTGCAGAAGGGCGAGCGGCGCTTCTGGGTCACGGCGGAGGGATGGCAGTGGTTTCGAAGAAGATCTTGAGAGTGTCGCAAGTGGGGAGTGAGAGGGCGGTTAGGATTCTGTTTTCGGTGGCGAAATATTCAGGGAGTCCGGCGGTGTTGACGGAAATGGCGCAGTTGGGGATCGTGGCGAAGCTTTGCCTGGTTCTGCAAGTTGAAAGTGGGAGCAAGACGAAGGAGAAGGCCAAAGAAATTTTGAAGATGCATGCTCGAGTTTGGAGGAATTCGGCTTGTATTCCTTCCAAATTGGCTTCTTCTTATCCTGCAAATTAA 1227 54.03 MEEIEVPNYFLCPISLQIMKDPVTVPSGITYDRPSIETWLFSTKNASCPITKLPIPADSDSLTPNHTLRRLIQAWCTLHSHHGIERFPTPKPPINKPQIHKLISSSSSTPSSLLSCIRRLRSLAAESESNRRCIESAGAPEFLASVIINSISDNDNETALISCHEALSTLHNLRLSDSKLKSLTVNAELFDSLTKVMEQGTYESRAYAALLLKSLLEVADPMELTFLKSELFVEIVGILKDQTSQQSLKAALGILITACTWGRNKVKAVEAGGVVALVEILLSGPERRVSEMALTAMDLLCGCAEGRAALLGHGGGMAVVSKKILRVSQVGSERAVRILFSVAKYSGSPAVLTEMAQLGIVAKLCLVLQVESGSKTKEKAKEILKMHARVWRNSACIPSKLASSYPAN 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2467864 2469090 + CmaCh06G005270.1 Cma06g00527 296081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00527 408 Gene3D - 94 406 IPR011989 -
Cma06g00527 408 PANTHER WDSAM1 PROTEIN 1 406 IPR045185 GO:0061630
Cma06g00527 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 85 IPR013083 -
Cma06g00527 408 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PUB23 1 406 - -
Cma06g00527 408 ProSiteProfiles U-box domain profile. 5 82 IPR003613 GO:0004842|GO:0016567
Cma06g00527 408 SUPERFAMILY RING/U-box 3 85 - -
Cma06g00527 408 CDD RING-Ubox_PUB 10 52 IPR045210 -
Cma06g00527 408 Pfam U-box domain 6 80 IPR003613 GO:0004842|GO:0016567
Cma06g00527 408 SUPERFAMILY ARM repeat 102 392 IPR016024 -
Cma06g00527 408 SMART Ubox_2 9 75 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g00348 Cma06g00527 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00257 Cma-Chr3:3616151 Cma06g00527 Cma-Chr6:2467864 3.31E-151 dispersed
Cma06g00527 Cma-Chr6:2467864 Cma07g01176 Cma-Chr7:6454855 4.78E-138 dispersed
Cma14g00362 Cma-Chr14:1595290 Cma06g00527 Cma-Chr6:2467864 1.79E-62 wgd
Cma20g00146 Cma-Chr20:723481 Cma06g00527 Cma-Chr6:2467864 5.24E-146 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00527 - - csv:101208445 569.696