Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00530 | ATGAACGATTTGTTCTCCACTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACGGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGACGACCTCAAGGAGCTTGAGAAACTCTACCAGAACCTCCACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACAGGACTCGTACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTACAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACTGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGAAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGAAGGAGCTGCACCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATTATTATCCTCAGCCTGCGGCCTTGGACTTGGAATGGTGGAATTTGCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTGTATTAAGCACGGCTTGGAGTGCTGGGGTTGAGCGAATCATTGATTATCCCCCATTTCCGGAACAGAGAGATAAGAATCATCATATAGAGCTTATGATTAGAGCCAAAAATGACTTGCCATTGCAACCAAACGCGGGGACTATCCTCTTCGCGAAGCCTGAAACAATTGCCATCAACGACAACATTGAAGCAAGCTGGATTTGGTCGCAACAAAGACAGGGTCTTGGTGCAGTGACTTGCACCAAGAACCCATTGCCTTACCGGTCAAAAACAAAGGTCACAGCAGTTTTCAGCTGCTGCAACCCATTTGGGGAGAACCATGCCATGCCCTCCTCCATCAATGATCTCTGCCAGTGA | 1254 | 48.41 | MNDLFSTRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDDLKELEKLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGICHGKHYHAAHIAAVLSTAWSAGVERIIDYPPFPEQRDKNHHIELMIRAKNDLPLQPNAGTILFAKPETIAINDNIEASWIWSQQRQGLGAVTCTKNPLPYRSKTKVTAVFSCCNPFGENHAMPSSINDLCQ | 417 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2498494 | 2503696 | + | CmaCh06G005300.1 | Cma06g00530 | 296084 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00530 | 417 | MobiDBLite | consensus disorder prediction | 102 | 124 | - | - | |
Cma06g00530 | 417 | PANTHER | SYNTAXIN OF PLANTS 122 PROTEIN | 9 | 286 | - | - | |
Cma06g00530 | 417 | Coils | Coil | 31 | 65 | - | - | |
Cma06g00530 | 417 | Gene3D | - | 28 | 161 | - | - | |
Cma06g00530 | 417 | Pfam | Syntaxin | 33 | 221 | IPR006011 | GO:0016020 | |
Cma06g00530 | 417 | SMART | SynN_4 | 26 | 152 | IPR006011 | GO:0016020 | |
Cma06g00530 | 417 | CDD | SynN | 31 | 165 | IPR006011 | GO:0016020 | |
Cma06g00530 | 417 | Gene3D | - | 183 | 277 | - | - | |
Cma06g00530 | 417 | SUPERFAMILY | t-snare proteins | 30 | 241 | IPR010989 | GO:0016020|GO:0016192 | |
Cma06g00530 | 417 | PANTHER | SYNTAXIN | 9 | 286 | IPR045242 | - | |
Cma06g00530 | 417 | SMART | tSNARE_6 | 181 | 248 | IPR000727 | - | |
Cma06g00530 | 417 | Coils | Coil | 189 | 209 | - | - | |
Cma06g00530 | 417 | Pfam | SNARE domain | 222 | 274 | IPR000727 | - | |
Cma06g00530 | 417 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 186 | 248 | IPR000727 | - | |
Cma06g00530 | 417 | CDD | SNARE_syntaxin1-like | 185 | 247 | - | - | |
Cma06g00530 | 417 | ProSitePatterns | Syntaxin / epimorphin family signature. | 192 | 231 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00530 | Cma-Chr6:2498494 | Cma14g00365 | Cma-Chr14:1632018 | 1.65E-07 | dispersed | |
Cma06g00530 | Cma-Chr6:2498494 | Cma07g00822 | Cma-Chr7:3806629 | 1.23E-128 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00530 | K08486 | - | csv:101208931 | 476.863 |