Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00530 ATGAACGATTTGTTCTCCACTCGCTCTTTCTCTCGCGACAGCCATGTCGTTGAGATGGGTATCTCCTCCTCTTCCCCTACGGCTGCTAATCTCGACAAGTTCTTTGAAGACGTTGAATCTGTGAAAGACGACCTCAAGGAGCTTGAGAAACTCTACCAGAACCTCCACGACTCCCATGAACAGAGTAAGACGCTTCACAATGCTAAGGCTGTTAAGGACCTCCGATCTCGCATGGATTCTGATGTTTCCCTTGCTCTCAAGAAGGCTAAGCTCATTAAGGTCCGATTGGAGGCGCTTGATCGCTCCAATGCCTCCAATCGGACCCAACCTGGCTGCGGCCCTGGATCGTCCTCTGACAGGACTCGTACTTCTGTGCTCAGTGGGTTGAGGAAGAAATTGCAGGATTCGATGGAGGGGTTCAATAATTTGAGGCAACAAATCTCTTCTGAGTACAGGGAGACCGTGCAGCGAAGGTATTTCACTGTTACTGGGGAAAGCGAGACATTCTTGCAGAAAGCCATTCAAGAACAAGGAAGAGGAAGAATCTTAGACACCATTAGCGAGATCCAGGAGAGGCATGATGCAGTGAAAGACCTGGAAAGGAATCTGAAGGAGCTGCACCAGGTTTTCATGGACATGGCGGTCTTGGTACACGAACAAGGCGAAAAACTCGACGACATCGAGAGCCATGTGAACAGAGCTCATTCTTTTGTTCGTGGTGGCACACAGGAGTTGTCAAAAGCAAGAGTATACCAGAAAAGCACTCGTAAATGGACGATTATTGGCATTATCATTTTGCTGATCGTTGCCTTGATTATTATCCTCAGCCTGCGGCCTTGGACTTGGAATGGTGGAATTTGCCATGGGAAGCATTACCACGCAGCTCACATAGCCGCTGTATTAAGCACGGCTTGGAGTGCTGGGGTTGAGCGAATCATTGATTATCCCCCATTTCCGGAACAGAGAGATAAGAATCATCATATAGAGCTTATGATTAGAGCCAAAAATGACTTGCCATTGCAACCAAACGCGGGGACTATCCTCTTCGCGAAGCCTGAAACAATTGCCATCAACGACAACATTGAAGCAAGCTGGATTTGGTCGCAACAAAGACAGGGTCTTGGTGCAGTGACTTGCACCAAGAACCCATTGCCTTACCGGTCAAAAACAAAGGTCACAGCAGTTTTCAGCTGCTGCAACCCATTTGGGGAGAACCATGCCATGCCCTCCTCCATCAATGATCTCTGCCAGTGA 1254 48.41 MNDLFSTRSFSRDSHVVEMGISSSSPTAANLDKFFEDVESVKDDLKELEKLYQNLHDSHEQSKTLHNAKAVKDLRSRMDSDVSLALKKAKLIKVRLEALDRSNASNRTQPGCGPGSSSDRTRTSVLSGLRKKLQDSMEGFNNLRQQISSEYRETVQRRYFTVTGESETFLQKAIQEQGRGRILDTISEIQERHDAVKDLERNLKELHQVFMDMAVLVHEQGEKLDDIESHVNRAHSFVRGGTQELSKARVYQKSTRKWTIIGIIILLIVALIIILSLRPWTWNGGICHGKHYHAAHIAAVLSTAWSAGVERIIDYPPFPEQRDKNHHIELMIRAKNDLPLQPNAGTILFAKPETIAINDNIEASWIWSQQRQGLGAVTCTKNPLPYRSKTKVTAVFSCCNPFGENHAMPSSINDLCQ 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2498494 2503696 + CmaCh06G005300.1 Cma06g00530 296084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00530 417 MobiDBLite consensus disorder prediction 102 124 - -
Cma06g00530 417 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 9 286 - -
Cma06g00530 417 Coils Coil 31 65 - -
Cma06g00530 417 Gene3D - 28 161 - -
Cma06g00530 417 Pfam Syntaxin 33 221 IPR006011 GO:0016020
Cma06g00530 417 SMART SynN_4 26 152 IPR006011 GO:0016020
Cma06g00530 417 CDD SynN 31 165 IPR006011 GO:0016020
Cma06g00530 417 Gene3D - 183 277 - -
Cma06g00530 417 SUPERFAMILY t-snare proteins 30 241 IPR010989 GO:0016020|GO:0016192
Cma06g00530 417 PANTHER SYNTAXIN 9 286 IPR045242 -
Cma06g00530 417 SMART tSNARE_6 181 248 IPR000727 -
Cma06g00530 417 Coils Coil 189 209 - -
Cma06g00530 417 Pfam SNARE domain 222 274 IPR000727 -
Cma06g00530 417 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 186 248 IPR000727 -
Cma06g00530 417 CDD SNARE_syntaxin1-like 185 247 - -
Cma06g00530 417 ProSitePatterns Syntaxin / epimorphin family signature. 192 231 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00530 Cma-Chr6:2498494 Cma14g00365 Cma-Chr14:1632018 1.65E-07 dispersed
Cma06g00530 Cma-Chr6:2498494 Cma07g00822 Cma-Chr7:3806629 1.23E-128 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00530 K08486 - csv:101208931 476.863