Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00538 ATGTCCCGATTATCCGCCACCACCCGTTTCTCGCTCCTCTTCTTCTCCAACTTCAACCTCAACCTCAACCCCACCCGTTTTCTCTCTCTATTCAACCCTTCTCGCCTCTCTTTCTCCACTCTCCATCTCTGCAAGTCCCTCGCTCGCCTTCTTGCCTCCAAAACCCTAGCCCTTTTCACCATGGACGATCTCTTCCCCAATGACGATGATTTCTGGGACCTCGATGTGGGTTCCCGTTCCCGCCCCCCACAGCGCCCTCGCCTCCTCGATGACTATGATTATGACGATAATGATCCCGAAAAGGTCTACTTTGTTCCCTTCAGGTGGCTGCAGGAAACTCAAAATGATAGCGATCAAGTAGTAGGTGTTTTATATAGTGTGTCATCAGATGAAGATGATGATTCAGGAATTCTTTTGGAGCTGAGGAAACAAGAAGTTTACACAAAATATGATGGTGTTGAAGAGAGGTCTTCTGGTCGTGAATACGCCTTGATTGGGGAAGCTTTGTGGTTGCAGGCTCTAAAGCGGCATAGTGACGTTAAAACAACATCAAATTATGCTGGCCGACTCTTCAGAGATGAAGAAACGTTGCAGGATGTTTTTCCTTTGCAAATTAGGATCTTGGTATCATGGGAGACAAATTTGTTAGCTGTGAAGATAAATCGAAAGGATAACTTAGCCGACTATTATAAGAGAGCTTCCATTATTTTCAATTCTAGCTCTGAACCGTTTCACATTTGGGACTTCTCAGGGCAAACAAATCAGCTTTTCGCAAATAATATGAACAATTTTCTTGATGATTCTCCTGTTCAACGAGTTAAAGAGGTCCGACTTGAGTTGCAAGTCCATGATGTTTTGGACAATATGATGGATAGATATGAGAAGGTTGCTAATCTAACTGAAGAGCTAAAGACTGAGGAGTCCCCCATTATCATAAATGGGATTATGGATAACGCGAAATCTTATTTGACTGAATCCAGCCCTATGATACGTGGAAACAGTTTCAGGGTAGCCAGTTCCATGGGTTTGACAGGATTACAGAATCTTGGGAATACTTGCTTCATGAATAGTGCTCTTCAGTGTTTGGTGCATACTCCAAAACTTGTTGATTATTTCCTTGGAAATTTTCAAAAGGAGATCAATTATGAAAACCCTTTGGGGATGAAAGGAGAGCTTGCTTCAGCATTTGGAGACTTGCTCAGGAAACTATGGGCCCCTGGCTCAAAATCAGTGCCTCCAAGAATGTTTAAACTTAAACTTTCTAATTTTGCTCCCCAATTCAGTGGTTATAATCAGCATGATTCCCAGGAATTTCTTGCCTTTTTGTTGGATGGCCTTCATGAAGATCTAAACCGCGTTAAATGCAAGCCATATTTTGAAGCTAAGGATGTAGATGGCCGCCGTGACGAAGAAGTAGCTGAAGAATGTTGGCAAAATCACATTGCCCGTAATGATTCTATTATAGTCGATTTGTGCCAGGGTCAGTTTCGGTCAACATTGGCGTGCCCTGCTTGCAATAAGTTATCAGTTACATTTGATCCATTCATGTACCTATCTCTGCCATTGCCCTCGACATCAGTGCGTAGTATGACCCTGAGGGTCTTTACATGTGATGGGATTACATTGCCTTCTACGTTTACCCTATCAGTGCCAAAGTCCGGAAGATTGAAAGATCTTATTGATGCCTTAAGCACTGCTTGTTCTTTGAGAGAGGATGAGACCCTGTTGGTAGCTGAGGTATACAAGAATCGTATCTTCCGTCTTCTGGAGGATCCATCTGATTCGCTAGCATTGATTAGGAACGAAGACAAGCTTGTTGCTTACAGGTTACCAAGAGATAGTGAACCATCCAAGTTGATTGTTTACGTGCATCAACAGTCTGAAACGCATGATAATTCAGGAAAGCTAATTTTAGGCTCAAAAACATTTGGAGTCCCATTTGTAGCAAGAGTGCCTGACTTTTGTCGTGAATCAGATATTCGTCAGCAGTTCCTCAAGTTTCTTGATCCGTTAAAAATGCCTGAAGACAATACGCTTAGGAACTGTGATGGCGAAGCTGGTATTTCTGGTAATGATGACTTTGAGATGGATGATGCCTCGGGCCCGAAAAACTTGGATACTGATGAGATACCAAACAATGGAAATATTGTGAACTCAAGTTTGCCTTCTGATTTCGTATTCTATTTGGCTGAATCACGGGGAGCTTCTGAAGGTACCCTGATTAATCCGGATGAACCTTTAGTTATCTCTGAGTTCACTGAGAGGTTGGATGTTCTTGTCATGTGGCCAGACACGATGATTAATAAATATGATACATGTCTAATGAGTTCACTGCCCGATGTTTTCAAACCACATTTTCTTGCAAGGACACCTCAAGAGTTTGTCGATTTGTATAAGTGCCTTGAAGCTTTCTTGAAGGAGGAGCCTTTAGGACCCGACGATATGTGGTATTGTCCTAGATGCAAGAAGCCTCAGCAAGCAAGAAAAAAGTTGGATCTCTGGAGGTTGCCTGAGATTCTTGTCATTCATCTCAAAAGGTTTTCGTATAGCCGATTTTTGAAGAACAAGCTGGAAACAGTTGTTGATTTCCCAATAGAAGACCTGGATTTTTCAAATTACATAGCTTTCAAGAATAGCCATCTGAGCAATCGTTACATGTTATATGCTGTTAGTAATCACTACGGAGGGATGGGCGCAGGTCACTATACTGCTCATGTTCTTCATGGTGGTAAATGGTATGAGTTTGACGACGATCGAGTTCTTCCTGTGAGCGAAGATGTTGTAAAGTCATCTGCTGCTTATGTTTTATTTTACAGAAGAATTCCAGAAGTATAA 2835 42.22 MSRLSATTRFSLLFFSNFNLNLNPTRFLSLFNPSRLSFSTLHLCKSLARLLASKTLALFTMDDLFPNDDDFWDLDVGSRSRPPQRPRLLDDYDYDDNDPEKVYFVPFRWLQETQNDSDQVVGVLYSVSSDEDDDSGILLELRKQEVYTKYDGVEERSSGREYALIGEALWLQALKRHSDVKTTSNYAGRLFRDEETLQDVFPLQIRILVSWETNLLAVKINRKDNLADYYKRASIIFNSSSEPFHIWDFSGQTNQLFANNMNNFLDDSPVQRVKEVRLELQVHDVLDNMMDRYEKVANLTEELKTEESPIIINGIMDNAKSYLTESSPMIRGNSFRVASSMGLTGLQNLGNTCFMNSALQCLVHTPKLVDYFLGNFQKEINYENPLGMKGELASAFGDLLRKLWAPGSKSVPPRMFKLKLSNFAPQFSGYNQHDSQEFLAFLLDGLHEDLNRVKCKPYFEAKDVDGRRDEEVAEECWQNHIARNDSIIVDLCQGQFRSTLACPACNKLSVTFDPFMYLSLPLPSTSVRSMTLRVFTCDGITLPSTFTLSVPKSGRLKDLIDALSTACSLREDETLLVAEVYKNRIFRLLEDPSDSLALIRNEDKLVAYRLPRDSEPSKLIVYVHQQSETHDNSGKLILGSKTFGVPFVARVPDFCRESDIRQQFLKFLDPLKMPEDNTLRNCDGEAGISGNDDFEMDDASGPKNLDTDEIPNNGNIVNSSLPSDFVFYLAESRGASEGTLINPDEPLVISEFTERLDVLVMWPDTMINKYDTCLMSSLPDVFKPHFLARTPQEFVDLYKCLEAFLKEEPLGPDDMWYCPRCKKPQQARKKLDLWRLPEILVIHLKRFSYSRFLKNKLETVVDFPIEDLDFSNYIAFKNSHLSNRYMLYAVSNHYGGMGAGHYTAHVLHGGKWYEFDDDRVLPVSEDVVKSSAAYVLFYRRIPEV 944
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2535326 2544436 + CmaCh06G005380.1 Cma06g00538 296092

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00538 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 2. 885 902 IPR018200 GO:0004843|GO:0006511
Cma06g00538 944 SUPERFAMILY Cysteine proteinases 342 940 IPR038765 -
Cma06g00538 944 Gene3D Cysteine proteinases 765 943 - -
Cma06g00538 944 CDD Peptidase_C19R 770 939 - -
Cma06g00538 944 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 345 360 IPR018200 GO:0004843|GO:0006511
Cma06g00538 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 68 942 - -
Cma06g00538 944 Gene3D Cysteine proteinases 332 577 - -
Cma06g00538 944 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 68 942 - -
Cma06g00538 944 Pfam Ubiquitin carboxyl-terminal hydrolase 344 938 IPR001394 GO:0004843|GO:0016579
Cma06g00538 944 Coils Coil 286 306 - -
Cma06g00538 944 MobiDBLite consensus disorder prediction 682 714 - -
Cma06g00538 944 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 344 941 IPR028889 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00538 - - K21343 csv:101210657 1566.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g00946 Cma06g00538 CCT
Cma06g00538 Cma15g01323 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00538 Cma-Chr6:2535326 Cma15g01323 Cma-Chr15:8308673 0 dispersed
Cma02g01298 Cma-Chr2:7639413 Cma06g00538 Cma-Chr6:2535326 0 wgd
Cma20g00140 Cma-Chr20:678683 Cma06g00538 Cma-Chr6:2535326 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g257 . . . Bda08g00751 Bpe05g00390 . . . Cmo06g00541 . Cma02g00946 Cma15g01323 Car02g00695 Car15g01188 . . Cpe05g00767 . . . . . . . . . . . . . . . . . . . Csa05g00158 Chy09g01340 . . . . . . . Bma05g00539 Bma12g00420 . Cmo02g00955 Cmo15g01386 Cma06g00538 . Car06g00476 . Cpe08g00954 . Bhi12g00079 . . . . . Lcy12g1510 Cla01g00140 Cam01g0145 . . Clacu01g0140 Cmu01g0140 Cre09g2366 Lsi09g00131 . . Cme09g01887
Vvi8g215 . . . . Bpe04g01484 Bpe03g01185 Bma04g01533 Bma10g00136 . . . . . . . . Cpe08g00954 . . . . . . . . . . . . . . . . . . . . . . Blo07g01212 Blo09g00461 Bda03g01622 Bda05g01122 . . . . . . . Cma06g00538 . Car06g00476 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008776 1 1 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 2 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00538 Cma_Chr06 FPKM 15.194454 16.952543 24.129997 23.935968 11.913937 12.755738 13.856362 18.559439 16.678249 17.682028