Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00550 ATGGAGAAAACAAGTTCGTTAGGATTGGCTAGGACGAAATCCGATCAACTGTTGGAGAAGGTGACAGCAGCATTCAAGTCACCGACGTCGAGCAGAGAGGCAAATGGGGTGGTGGGGGAGAGTGGTAGCTCGACGTTGTCAAGGAAGCCGAGCAAGCAGACGCTGACAGCTCCTTCACCGGGGTGTGGCAGTGGCAGTGGTCGAAACACACACATCAGGAAGTCTAGGAGTGCACAACTGAAGCTGGATTTGGATGACTTGGGCAGTGGTGCAGCCCTGAGTAGAGCTTCAAGTGCTAGCTTGGGCTTGTCATTCTCCTTCACTGGCTTCACACTGCCACCTGATGAAATTGCTGATTCCAAGACATTTAGTGATGAAGATATACCAGAGGATGTACAAGCAGGAACACGGAAGGCCAGATTTCAAACAGAACCAACCATGCCTATTCATCTCAAGTTCACAGATGTTACTTATAAAGTAATTATAAAAGGATTGCGGACAAATGTGGAGAAAGAGATCCTGAACGGGATTACCGGTTTGGTACACCCAGGCGAAGTTCTGGCCTTAATGGGACCTTCTGGAAGTGGCAAGACAACATTACTCAATCTGCTCGGAGGGCGGCTCATACGATCTACAGTTGGTGGTTCAATTACCTACAATGATCAACCATACAATAAGATAGGATTCGTGATGCAGGAGGATGTTCTATTTCCCCACTTGACAGTGAAAGAAACATTGAGATATGCAGCTTTGCTACGACTGCCAAGAACATTAACGAAAGAGCAAAAGGAAAAGCGTGCTATGGACATTATCTATGAGCTGGGCCTTGAAAAGTGCCAGGATACAATGATTGGTGGCTCCTTCGTCCGTGGGGTTTCGGGTGGAGAAAGGCGTCGGGTCTGTATAGGCAATGAGATCTTAATCAACCCCTCTCTCCTCTTCCTTGATGAACCAACCTCAGGCTTGGATTCTACAACTGCATTGAGAATTGTTCAGATATTACATGAGATAGCTGAAGCTGGGAAGACCGTGGTGACAACGATTCACCAACCATCAAGCAGACTATTCCACAACTTCGACAAGCTAATTCTTCTTGGGAAGGGAAACTTAATCTATTATGGAAAAGCAGCAGAAGCAATGAACTATTTCTCATCTATAGGATGTTCCCCACTTATTGCAATGAATCCTGCTGAGTTCTTGCTTGACCTTGCAAATGGCAACCTCAATGATGTGTCTGTTCCATCAGAGCTAGAGGATAAGGTGCAAGTAGAGAATTCTGAGCCTGACAGTAGGCTTGATAGGCCTTCTCCAGCTCTTGTGCAGGAGTATCTTGTGGAGGCTTACGAGACGAGAGTTGCAGAGAAGGAAAAGAGGAAGATGCTCGCACCTCTAATGCTCGACGAAGAGCTGAAATCGAAGGTGAAGTCTTCGAAAAGGCAATGGGGAGCGAGCTGGTGGGAACAATATTCGATACTGTTCCATAGAGGAATTAAAGAAAGACGCCATGAATACTTCAGCTGGCTGAGAATCACTCAAGTTCTCGCCACCGCCGTTATCTTAGGGTTACTGTGGTGGCGATCGGAAAGTGGCACTCCAAAAGGCTTGCATGACCAGGCTGGATTGCTGTTCTTCATAGCAGTGTTTTGGGGATTCTTCCCTGTGTTTACAGCAATATTCACATTCCCTCAAGAAAGAGCAATGCTAAACAAAGAAAGAGCGGCTGATATGTACAGATTCAGCGCTTACTTTTTGGCAAGAACCACAAGTGATCTTCCACTTGATCTTTTGTTGCCTATTCTTTTCCTTCTTGTTGTCTACTTCATGGCAGGCCTAAGGCTTAGCGCTGCTCCTTTCTTCCTCACCATGGTCACTGTCTTCCTCTGCATTGTGGCTGCTCAGGGCCTTGGCTTGGCTATTGGAGCTACGCTCATGGATGTCAAGAAGGCCACGACTTTAGCCTCGGTCACCGTCATGACCTTCATGCTTGCCGAAAGTTCCGGTGTTCGTGTCTTGGATCCGTTTCGTGTCTTTCAACTATCACACATACAAGCTTCTCCTAAAGGTACAGTACAACAACATCCTACCTACCGTAAAGGGTATGAAAATGGACAACGGAGTAGTCGAAGTTACTGCTCTGATCACCATGGCTTTCGGGTATCGTCTCTTAGCTTACATTTCGTTGAGGAGGATGAAACTATCAGGAGTTTAACAGAAACAGAATGCAAAAGATTTTCTGAGGAAGATTTACTACAAGCAATCAGAGCATTGACGGTGATAGCATCGAAGGCTGAACGGGACGTGTTATCGTCGGTACGGCTTGCTCCTGGAGGTGCATCATCTAGCTAG 2346 46.59 MEKTSSLGLARTKSDQLLEKVTAAFKSPTSSREANGVVGESGSSTLSRKPSKQTLTAPSPGCGSGSGRNTHIRKSRSAQLKLDLDDLGSGAALSRASSASLGLSFSFTGFTLPPDEIADSKTFSDEDIPEDVQAGTRKARFQTEPTMPIHLKFTDVTYKVIIKGLRTNVEKEILNGITGLVHPGEVLALMGPSGSGKTTLLNLLGGRLIRSTVGGSITYNDQPYNKIGFVMQEDVLFPHLTVKETLRYAALLRLPRTLTKEQKEKRAMDIIYELGLEKCQDTMIGGSFVRGVSGGERRRVCIGNEILINPSLLFLDEPTSGLDSTTALRIVQILHEIAEAGKTVVTTIHQPSSRLFHNFDKLILLGKGNLIYYGKAAEAMNYFSSIGCSPLIAMNPAEFLLDLANGNLNDVSVPSELEDKVQVENSEPDSRLDRPSPALVQEYLVEAYETRVAEKEKRKMLAPLMLDEELKSKVKSSKRQWGASWWEQYSILFHRGIKERRHEYFSWLRITQVLATAVILGLLWWRSESGTPKGLHDQAGLLFFIAVFWGFFPVFTAIFTFPQERAMLNKERAADMYRFSAYFLARTTSDLPLDLLLPILFLLVVYFMAGLRLSAAPFFLTMVTVFLCIVAAQGLGLAIGATLMDVKKATTLASVTVMTFMLAESSGVRVLDPFRVFQLSHIQASPKGTVQQHPTYRKGYENGQRSSRSYCSDHHGFRVSSLSLHFVEEDETIRSLTETECKRFSEEDLLQAIRALTVIASKAERDVLSSVRLAPGGASSS 781
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2606979 2613405 - CmaCh06G005500.1 Cma06g00550 296104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00550 781 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 151 392 IPR003439 GO:0005524
Cma06g00550 781 Pfam ABC transporter 174 320 IPR003439 GO:0005524
Cma06g00550 781 ProSitePatterns ABC transporters family signature. 292 306 IPR017871 GO:0005524
Cma06g00550 781 MobiDBLite consensus disorder prediction 24 73 - -
Cma06g00550 781 PANTHER ABC TRANSPORTER G FAMILY MEMBER 22 35 668 - -
Cma06g00550 781 Gene3D - 150 386 IPR027417 -
Cma06g00550 781 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 35 668 - -
Cma06g00550 781 MobiDBLite consensus disorder prediction 24 75 - -
Cma06g00550 781 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 384 IPR027417 -
Cma06g00550 781 Pfam ABC-2 type transporter 488 663 IPR013525 GO:0016020|GO:0140359
Cma06g00550 781 SMART AAA_5 183 369 IPR003593 -
Cma06g00550 781 CDD ABCG_EPDR 148 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00550 K05681 ABCG2, CD338; ATP-binding cassette, subfamily G (WHITE), member 2 - csv:101213089 1134.4
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00550 Cma16g00503 CST
Cma06g00550 Cma14g00381 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00550 Cma-Chr6:2606979 Cma16g00503 Cma-Chr16:2563264 3.02E-172 dispersed
Cma18g00079 Cma-Chr18:343207 Cma06g00550 Cma-Chr6:2606979 8.72E-57 dispersed
Cma14g00382 Cma-Chr14:1732632 Cma06g00550 Cma-Chr6:2606979 1.83E-128 transposed
Cma14g00381 Cma-Chr14:1730080 Cma06g00550 Cma-Chr6:2606979 0 wgd
Cma20g00093 Cma-Chr20:400257 Cma06g00550 Cma-Chr6:2606979 9.65E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g968 . . . . . Bpe07g00048 . . Cmo06g00554 Cmo16g00550 . . . . . Cpe14g00425 . . . . . . . . . . . . . . . . . . Cone9ag0341 . . . . . . . . . . . Bma12g00629 . . . Cma06g00550 Cma16g00503 Car06g00489 . Cpe01g00545 . . . . . . . . . . . . . . . . Csa04g00716 . .
Vvi8g187 . . Bda01g00414 . Bpe04g01475 Bpe03g01181 Bma04g01522 Bma10g00140 Cmo06g00554 Cmo14g00380 . . . . . . Cpe08g00945 . . . . . . . . . . . . . . Cone3ag0122 Cone10ag0105 . Cone19ag0443 . . . . . Blo09g00453 Bda03g01617 Bda05g01118 . Bpe02g00689 Bma01g02025 . . . . Cma06g00550 Cma14g00381 Car06g00489 Car14g00350 Cpe03g00333 . Bhi11g02455 . . . . . . Cla10g01716 Cam10g1765 Cec10g1814 Cco10g1786 Clacu10g1782 Cmu10g2532 Cre10g1917 Lsi03g01787 Csa03g03525 Chy04g01828 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003327 3 4 3 3 3 1 2 1 1 1 1 1 2 0 1 2 1 3 2 1 1 1 1 1 1 1 1 4 1 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00550 Cma_Chr06 FPKM 0.898244 0.789228 44.868 45.760815 5.203123 6.099308 4.825843 2.330482 2.017132 1.813463