Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00571 ATGCTGAACGTGGTACGCGTGCACCTGCCCTCTGATATTCCTATTGTAGGTTGCGAACTCACGCCCTACGTGCTCCATCGACGGCCTGATAAGAACATTAGCACTGATGATGTTTCTGAGTCCGCTGCACTTGGCGGTCAATTCCTGAGATACAGATGGTATCGCTTACAAAGTGATAAAAAAGTTGCTGTTTGTAGTGTACATCCTTCTGAGCAAGCCACTTTACAATGTTTAGGTTGTGTTAAAGCCAAAATTCCTGCTTTTAAAAGTTATCATTGCACCACCAAATGCTTTTCTGATTCTTGGCAGCATCATCGTGTTCTACATGACCGTGCTGCTAGTGCTATGAATGAAAATAGTAATGAAGAGGAAGAGTTATTTGGACGTCATAACAATAATAATAATGCAGCACCTGGTGCCATCAACCCCAGCTCTTCTAGCATGCTCAATGGTTCAACAACATTGTATCCTGCAGCTGTTACCCAAAAGACTGGTGTGGAAACTTGGTTAGAAGTTGGACGCTGTAAGAGTTACACACCAACGGCTGAAGATATTGGCCACGTTCTTAAGTTTGAATGTGCTGTGGTTGATGTTGAAACCATGTTATCTGTGGCATCTCCACTTACTGTCTCAACTTCTCGGGTCATTCCAGCTCCATCTCCTACTCCACGTCACTTAATACCTGTTAATGGGGTTGATACGATGGGAAAGATAGATTTGGATGGTCGAGTATCATCATCAGGAACTTTTACAGTGCTTTCCTACAATATTTTGGCTGATGTTTATGCCACAAGTGAAACATTCAGTTATTGCCCTTCATGGGCCCTTTCATGGCCATATCGGCGACAAAATCTGCTAAGGGAAATAGTTGGCTATCGTGCCGATATAATTTGTCTTCAGGAGGTTCAGAGCGATCACTTTCTGGAATTTTTTGCTCCTGAACTTGACAAACATGGTTATCAAGCACTTTACAAGAGAAAAACCAATGAGGTCTACAATGGGAACATTCAAACAATTGATGGCTGTGCAACATTTTTTCGTAGAGATAGATTTGCACATGTCAAAAAATATGAGGTTGAGTTCAACAAAGCTGCACAATCTTTGACTGACCCAGCTACTATTTTAACTGCTCAAAAGAGAAATGCTTTAAACAGATTAATCAAGGATGATGTTGCACTTATCGTAGTTCTTGAATCAAAATTCAGCACTCCAACGGTTGATAATCCAGGAAAAAGGCAGCTTGTTTGCGTGGCTAATACGCATATTAATGGGAATCAAGATTTAAAAGATGTCAAACTCTGGCAGGTGCATACTTTATTGAAAGGACTGGAGAAAATAGCTGTTAGTGCAGATATTCCAATGTTGGTCTGTGGGGATTTTAATTCTGTTCCTGGAAGTGCCCCACATCATCTCCTTGCTAGGGGGAAGGTGGAACCAACACATCCAGATTTAGCTGTAGATTCTCTAAATCTATGTCAGCCACATAGCAAATTGTCACATCAACTACCTTTGGTTAGTGCATACTCCTACTTTGCAATAAAGGGAGTTGGTAACGGTTCAGATAAGCAGAGGAAAAGGCTGGATCCTACAACAAATGAACCCTTATTTACGAATTGTACTAGAGATTTTATTGGAACCCTGGACTACATTTTCTACACAGCGGACACTTTAACAGTGGAGTCTTTGTTAGAGCTCCTGGATGAGGAGAGCTTGAGGAAAGATACAGCACTTCCATCCCCAATATGGTCCTCCGATCATACAGCACTCCTTGCCGAGTTTCGGTGCAAATCTCGATCTAGACGTTAA 1806 41.75 MLNVVRVHLPSDIPIVGCELTPYVLHRRPDKNISTDDVSESAALGGQFLRYRWYRLQSDKKVAVCSVHPSEQATLQCLGCVKAKIPAFKSYHCTTKCFSDSWQHHRVLHDRAASAMNENSNEEEELFGRHNNNNNAAPGAINPSSSSMLNGSTTLYPAAVTQKTGVETWLEVGRCKSYTPTAEDIGHVLKFECAVVDVETMLSVASPLTVSTSRVIPAPSPTPRHLIPVNGVDTMGKIDLDGRVSSSGTFTVLSYNILADVYATSETFSYCPSWALSWPYRRQNLLREIVGYRADIICLQEVQSDHFLEFFAPELDKHGYQALYKRKTNEVYNGNIQTIDGCATFFRRDRFAHVKKYEVEFNKAAQSLTDPATILTAQKRNALNRLIKDDVALIVVLESKFSTPTVDNPGKRQLVCVANTHINGNQDLKDVKLWQVHTLLKGLEKIAVSADIPMLVCGDFNSVPGSAPHHLLARGKVEPTHPDLAVDSLNLCQPHSKLSHQLPLVSAYSYFAIKGVGNGSDKQRKRLDPTTNEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPIWSSDHTALLAEFRCKSRSRR 601
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2753710 2760286 - CmaCh06G005710.1 Cma06g00571 296125

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00571 601 CDD Deadenylase_CCR4 252 595 - -
Cma06g00571 601 Gene3D Endonuclease/exonuclease/phosphatase 221 601 IPR036691 -
Cma06g00571 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 34 598 - -
Cma06g00571 601 MobiDBLite consensus disorder prediction 130 144 - -
Cma06g00571 601 Pfam Endonuclease/Exonuclease/phosphatase family 253 586 IPR005135 GO:0003824
Cma06g00571 601 SUPERFAMILY DNase I-like 246 597 IPR036691 -
Cma06g00571 601 PANTHER CARBON CATABOLITE REPRESSOR PROTEIN 4 HOMOLOG 1-LIKE 34 598 - -
Cma06g00571 601 MobiDBLite consensus disorder prediction 120 144 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00571 K12603 CNOT6, CCR4; CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4] - csv:101217887 1080.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00571 Cma14g00397 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00571 Cma-Chr6:2753710 Cma09g00752 Cma-Chr9:3605083 6.41E-30 dispersed
Cma03g00025 Cma-Chr3:247565 Cma06g00571 Cma-Chr6:2753710 0 transposed
Cma14g00397 Cma-Chr14:1842506 Cma06g00571 Cma-Chr6:2753710 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g936 . . . . . . . . Cmo06g00577 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma06g00571 . Car06g00508 . . Cpe06g00591 . . . . . . . . . . . . . . . . . .
Vvi8g1309 . Blo12g00554 . . . . . . Cmo06g00577 Cmo14g00398 . . Car03g00018 . . . Cpe08g00926 . . . . . . . . . . . . . . . . . . . . . Cme04g02269 . . . . . . . Bma04g00507 . Cmo03g00026 . Cma06g00571 Cma14g00397 Car06g00508 Car14g00365 Cpe03g00351 . Bhi11g02496 . . Lac10g2677 . . . Cla10g01690 Cam10g1741 Cec10g1791 Cco10g1758 Clacu10g1760 Cmu10g2509 Cre10g1893 Lsi03g01760 Csa03g03549 Chy04g01802 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001540 1 8 2 2 2 2 3 2 2 2 2 2 3 2 1 3 2 4 3 2 3 2 2 2 2 2 1 2 4 1 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00571 Cma_Chr06 FPKM 17.613533 18.370146 20.705671 20.146114 22.338121 22.7239 23.450253 24.451059 22.612518 24.729776