Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00584 ATGGTTAAATTGTCAGAGAAGTGTTCCATTCAGGTTCCTATGGAGGTTGTTGATTTCATTGATGCTGGGAAGAATCCAGATGAATTTGCAAGGGATGGTTTACGGAAGCATCTTTTGGAGGTACTTGAGCAGACATTTCCCGATGAAGTTGAGTCATACAGAGAAATTCGTGCTTCTTCTGCTGCCGAAACAAAAAGGATAGCGCAAGCACAAAGTATGTTACCAAATGGGGATATGAAGGTTAAGATGGAGGTTTAG 258 41.47 MVKLSEKCSIQVPMEVVDFIDAGKNPDEFARDGLRKHLLEVLEQTFPDEVESYREIRASSAAETKRIAQAQSMLPNGDMKVKMEV 85
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2808723 2811693 - CmaCh06G005840.1 Cma06g00584 296138

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00584 85 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 33 84 - -
Cma06g00584 85 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10 1 32 - -
Cma06g00584 85 Pfam Transcription factor subunit Med10 of Mediator complex 7 32 IPR019145 GO:0003712|GO:0006357|GO:0016592
Cma06g00584 85 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED 33 84 - -
Cma06g00584 85 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10A-RELATED 1 32 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00584 K15151 MED10, NUT2; mediator of RNA polymerase II transcription subunit 10 - csv:101214413 139.813
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00584 Cma16g01230 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01230 Cma-Chr16:9327015 Cma06g00584 Cma-Chr6:2808723 3.75E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g239 . . . . . . . . . Cmo16g01276 . . . . . Cpe14g01016 . . . . . . . . Cla10g00084 Cam10g0081 Cec10g0085 Cco10g0088 Clacu10g0083 Cmu10g0929 Cre10g0344 . Cone12ag0590 . . Lsi07g01110 . . Cme06g02390 . . . . . . . . . . . Cma06g00584 Cma16g01230 . Car16g01159 Cpe08g00915 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008111 2 0 1 2 1 1 1 0 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00584 Cma_Chr06 FPKM 3.478495 5.504056 4.282481 5.188457 5.103467 3.104694 4.75674 6.993804 5.302821 5.318561