Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00588 ATGTCGACTACTCCCGAGGAACCTAATAATTTGCAAAACGGAATCGTAACTGAGCCACAAATTTCGTCAGAATCAGAGCAAACCGATGAGTCCAGATCAGAGCCAGAACGCATAGCAGACGCAATTCCCAAAGCTGAATCACAGCTAGAACGAGAATCAGAATCAGAATCAGTTTATGTAGAAGCAGAAGCAGAAGCAGAATCAGAGCTGGCGTCTCGAAGGAAACAGTTATCGGAGTCACTGCCATTACAGGTAGTGACGAATGTTTCAGATCCGAAATTTGATGAGTCTAAAGGAACCTCGATCCCGTCCAACGGCATCGAGAACTCGCAGCCTACGCTGCGTAAAGATGAAGGAAGCCGGACGTTTACAATGAGAGAGTTGCTGAATGGATTGAAAGGTGAAGATGGCAACGACAGCGTTAACGAATCTGAAGGCGAGAAGCCCGACGGTTACAGGTTTGTTGTGTACTTGAGAATACTGAATATGGTTGATTGTCTTAATCAAGATAGCCCACAACAGCCTTATTCTGAACAGAGCAGAGCTGCCATGGAGTTGATCAGCAGTGTTACAGGTGTTGATGAAGAGGGCCGTTCTCGCCAACGGATTCTCACATTTGCTGCTAAGAGGTATGCTAGTGCAATTGAGAGAAATGCTCAAGACTATGATGCTCTATACAATTGGGCTTTGGTCCTCCAGGAGAGTGCAGATAATGTTAGTCCAGATTCCACTTCACCTTCTAAAGATGCATTGCTTGAGGAGGCTTGTAAAAAGTATGATGAGGCAACCCGTCTTTGCCCAACACTTCACGATGCTTTTTATAATTGGGCTATTGCAATCTCTGATCGGGCCAAAATGCGTGGTCGTACGAAGGAGGCTGAAGAACTGTGGAAGCAGGCTACCAAAAATTATGAGAAAGCTGTCCAACTCAACTGGAATAGTCCCCAGGCGCTAAATAATTGGGGGCTTGCTCTACAGGAACTCAGTGCGATTGTGCCAGCACGAGAAAAGCAGACAATTGTAAGAACAGCTATCAGTAAGTTTCGTGCAGCTATACAGTTGCAATTTGATTTTCATCGAGCAATTTACAATCTTGGTACTGTTTTGTATGGACTAGCTGAGGACACATTACGGACTGGTGGAACAGGAAACTTTAAGGATGTTTCCCCCAATGAGTTGTACAGCCAATCTGCAATTTATATTGCAGCTGCTCATGCTTTAAAACCAAGTTACTCTGTTTACAGCAGTGCCTTGCGATTGGTTCGTTCAATGCTGCCGTTACCCTATCTAAAAGTTGGGTACCTGACTGCACCTCCTGTAGGGAAACCACTTGCTCCACACAGTGATTGGAAACGTTCACAGTATTTCCTAAATCATGATGTTTTGCAAAAGCTTAAAATAGGGGGGGAACAAATACAAACATCCCCTAATGCTTTAGGAAGATCTGGAAGTACCTTGAATGGCGATATGCCAATCAAAGTAGAAATTCCAGATATTGTATCTGTATCAGCATGTGCAGATCTAACTTTACCGCCGGGCGCTGGACTTTGCATTGACACAATCCATGGACCAGTTTTCTTGGTTGCTGACTCGTGGGATGCGCTCGATGGATGGCTTGATGCGGTTAGATTAGTTTATACAATCTATGCTCGAGGCAAGAACGACGTTTTGGCTGGCATTGCAACGGGTTGA 1692 44.8 MSTTPEEPNNLQNGIVTEPQISSESEQTDESRSEPERIADAIPKAESQLERESESESVYVEAEAEAESELASRRKQLSESLPLQVVTNVSDPKFDESKGTSIPSNGIENSQPTLRKDEGSRTFTMRELLNGLKGEDGNDSVNESEGEKPDGYRFVVYLRILNMVDCLNQDSPQQPYSEQSRAAMELISSVTGVDEEGRSRQRILTFAAKRYASAIERNAQDYDALYNWALVLQESADNVSPDSTSPSKDALLEEACKKYDEATRLCPTLHDAFYNWAIAISDRAKMRGRTKEAEELWKQATKNYEKAVQLNWNSPQALNNWGLALQELSAIVPAREKQTIVRTAISKFRAAIQLQFDFHRAIYNLGTVLYGLAEDTLRTGGTGNFKDVSPNELYSQSAIYIAAAHALKPSYSVYSSALRLVRSMLPLPYLKVGYLTAPPVGKPLAPHSDWKRSQYFLNHDVLQKLKIGGEQIQTSPNALGRSGSTLNGDMPIKVEIPDIVSVSACADLTLPPGAGLCIDTIHGPVFLVADSWDALDGWLDAVRLVYTIYARGKNDVLAGIATG 563
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2820082 2828399 + CmaCh06G005880.1 Cma06g00588 296142

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00588 563 MobiDBLite consensus disorder prediction 1 24 - -
Cma06g00588 563 MobiDBLite consensus disorder prediction 1 62 - -
Cma06g00588 563 MobiDBLite consensus disorder prediction 88 115 - -
Cma06g00588 563 SUPERFAMILY TPR-like 207 329 IPR011990 GO:0005515
Cma06g00588 563 Gene3D Tetratricopeptide repeat domain 313 427 IPR011990 GO:0005515
Cma06g00588 563 Gene3D Tetratricopeptide repeat domain 193 312 IPR011990 GO:0005515
Cma06g00588 563 PANTHER - 10 562 - -
Cma06g00588 563 Pfam Plant specific mitochondrial import receptor subunit TOM20 297 368 - -
Cma06g00588 563 PANTHER PROTEIN HLB1 10 562 - -
Cma06g00588 563 MobiDBLite consensus disorder prediction 25 58 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00588 - - - cmax:111465172 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00470 Cma-Chr3:4760968 Cma06g00588 Cma-Chr6:2820082 6.46E-08 dispersed
Cma16g01228 Cma-Chr16:9292258 Cma06g00588 Cma-Chr6:2820082 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g233 . . . . . . . . Cmo06g00591 Cmo16g01275 . . . . . Cpe14g01015 . . . . . . . . Cla10g00086 Cam10g0085 Cec10g0089 Cco10g0091 Clacu10g0086 Cmu10g0933 Cre10g0347 Cone8ag0554 Cone12ag0553 . . Lsi07g01112 . . Cme06g02392 . . . . . . . Bma12g00254 . . . Cma06g00588 . Car06g00520 Car16g01157 Cpe08g00914 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009993 1 0 0 2 1 1 2 1 1 1 0 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00588 Cma_Chr06 FPKM 18.388575 20.682461 15.409704 15.600578 16.459784 16.140232 16.233488 15.958924 13.960786 15.255782