Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00589 ATGGGAAGGATGGGAGGTCGGCAAAGGACTTACAGCGCCAATTTCACCGATTATAAGCTTCTTGAAGAGATTGGTTATGGTGCTAGTGCCACGGTTTTTCGAGCGATCTATACTCCGTCGAATGAAGTTGTTGCCATTAAGTGTTTGGATCTTGATCGCTGTAATAGTAATCTAGATGATATACGTAGGGAGGCTCAGACAATGAGTTTGATAGATCATCCAAACCTCGTAAGGGCTTATTGTTCATTTGTTGTTGACCGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATTAAGACAGCATACTCAGATGGCTTTGAAGAGGTTGCTATTGGTTCTGTCCTGAAAGAAACTCTTAAAGCCTTGGAGTACCTTCATCGACAAGGACACATACATCGGGATGTAAAGGCTGGAAATATACTACTCGATGGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCGCCTGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCCGATATTTGGTCCTTTGGTATTACAGCATTGGAGTTGGCTCATGGTCATGCACCGTTCTCAAAATATCCTCCAATGAAGGTGCTTCTTATGACCATACAAAATGCTCCTCCTGGGCTGGATTATGATAGGGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTTGCTAACTTGCCACCTCTTTCACTTCGTGTGAAGGACCTGCTGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCATTATCACAGAGTGAGTACCAGCGAGGAGTTAGCGCATGGAAATTTGATGTTGAGGATTTGAAAGCCCAAGCTTCCCTGGTGAATGATGATATGGAAGAGATGATGGACAAGGAGGAGAATATAAATACTTGTCGTGTTAAGGATGCTTTTTGTTCTCAATCTAGTTTGAGGAATTTCAATTCATGTAATGAATCATCTCAGGATGAACATGGAGTAGGGGCAAGTGGTCAGGGGTTCCCAAAAGCGGAGTGCTTGAACAAAAAGGGAAACTTTATGGAGGGTGATATGCTGAAAGCTGGGTTCCAAGAAACAACTGGATGGAAGAGAAATGGAACTAGCACTGAAGCAGAAGCTTCTACATCTGGCCAAGACAGTGTACAAGGCAAAACCAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGTACTGTGCTTAGTCATTCTCTATCAGAAAGAGTGCGAGGATCTGATAGGTTTGAATCTGAAATTCAACCATCTACTGAAAAAAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCTCTAATGCTGCCAAACCGTGCCTCAGCAAACAGCCTATCAGCTCCCATAAAACCTTCTGGAGGGTATAGAGATTCAATGGATGACAAATCAAAAGCTAATCTTGTGCAAATTAAGGGGCGTTTTTCAGTGACGTCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGCACGGTTTCACGACGGTCTGCACAGAACTCACCTCTACGAAAGTCGGCTAGTGTTGGTGATTGGATATTTGATTCCAAGCAGTCTGTCAGCCAACCCCCCAAGGAGGCTTGCAACATCAACATGCCCACATCAATTCTTATGCCTCATCTTCAGAATCTTTTCCATCAGACGTCAATTCAACAGGATCTTATAGTGAACTTATTGAATAGCTTACAAACAGCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCATTGCCTCGAAGTTTGGAGAATAATGGAAGTGCCGAAACAGCAGCGGTTGAGAGAGAGCGTTTACTGATGCGTAAAGTCTCTGAACTTCAAGCTAGAATGACGCATTTGACGTATGAGCTGACTTCTGAAAAGTTGAAATACATACAATTACAAGAGCAGTTCAACTCAGCATCTGGTCAGGAAGAAAACGAGATCAAGAGGGAAGAGAACGTCTGA 2193 43.46 MGRMGGRQRTYSANFTDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVDRNLWVVMPFMAEGSCLHLIKTAYSDGFEEVAIGSVLKETLKALEYLHRQGHIHRDVKAGNILLDGNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELSLKKLFANLPPLSLRVKDLLLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWKFDVEDLKAQASLVNDDMEEMMDKEENINTCRVKDAFCSQSSLRNFNSCNESSQDEHGVGASGQGFPKAECLNKKGNFMEGDMLKAGFQETTGWKRNGTSTEAEASTSGQDSVQGKTKTQMPKGRQTQSGPLLPGTVLSHSLSERVRGSDRFESEIQPSTEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGYRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSAQNSPLRKSASVGDWIFDSKQSVSQPPKEACNINMPTSILMPHLQNLFHQTSIQQDLIVNLLNSLQTADVVDATQNGKLPPLPRSLENNGSAETAAVERERLLMRKVSELQARMTHLTYELTSEKLKYIQLQEQFNSASGQEENEIKREENV 730
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2831850 2843752 + CmaCh06G005890.1 Cma06g00589 296143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00589 730 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00589 730 CDD STKc_OSR1_SPAK 17 279 - -
Cma06g00589 730 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 3 722 - -
Cma06g00589 730 MobiDBLite consensus disorder prediction 430 542 - -
Cma06g00589 730 Gene3D Transferase(Phosphotransferase) domain 1 99 313 - -
Cma06g00589 730 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524
Cma06g00589 730 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00589 730 Coils Coil 343 363 - -
Cma06g00589 730 MobiDBLite consensus disorder prediction 431 475 - -
Cma06g00589 730 SUPERFAMILY Protein kinase-like (PK-like) 16 333 IPR011009 -
Cma06g00589 730 MobiDBLite consensus disorder prediction 483 507 - -
Cma06g00589 730 Gene3D Phosphorylase Kinase; domain 1 7 95 - -
Cma06g00589 730 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 3 722 - -
Cma06g00589 730 SMART serkin_6 18 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00589 Cma16g01228 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02707 Cma-Chr4:18283235 Cma06g00589 Cma-Chr6:2831850 0 dispersed
Cma06g00589 Cma-Chr6:2831850 Cma15g00341 Cma-Chr15:1575235 0 dispersed
Cma06g00589 Cma-Chr6:2831850 Cma16g01228 Cma-Chr16:9292258 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68636 PF00069 Pkinase 9.30E-61 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00589 - - csv:101213683 1333.55