Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00591 ATGGCGGCTTCTTCAATTTCCTTCACCCTTACTTCTCCATTCCTCGCTTCTTCCAGGCTTCACCCCACCGCCAAACCCCTCTCCTTCTCCTTCGCTCCTCCATTCCCCAAATCCTCTTCTCCTTTCCGGACCCTTTTCCCCATTGCTTCCAATTCCTCCTCTAAACCCTCAATTCCATCTCCCATTGACTCCTCGAGTTCTTTCGCTGCCCCTTCGCTTGCCTTCAATCCAACATTGAAGTCCCGTCTCCGCAATGGCGAAACCCTCTACGGTCTCTTCCTCCTTTCCTTCTCCCCCACTCTTGCCGAGATCGCTGGTCTCTCCGGCTACGATTTCGTCGTCGTCGACATGGAGCACGGCTACGGCGGAATCTCCGATGCCCTCCCCTGTCTCCGCGCCCTCTCCGCCACTCAAACTCCAGCCATTCTCCGCATCCCCGAGAGCTCTGCCGCCTGGGCCAAAAAGGCCCTAGATTTAGGACCGCAGGGTATCATGTTTCCAATGATCGATTCGTCCAAAGAAGCCAAAAAAGCTGTTTCATATTGCAGATTCCCACCCGCCGGAGTCCGTGGATCAGCTCATCCAGTGGTTAGAGCATCGAAATACGGCATTGACGAAGGGTATTTGACAAATTACGAGGACGAATTACTGATTATGTGTCAGATTGAATCGGAGCAGGCGGTGAAGAAGATAGATGACATAATGGAAGTGGATGGGGTTGATTGCATTCAAATGGGGCCATTGGACATGAGTGGAAGCATGGGATATCTATGGGACCCTGGACATAAGAAGGTCAGAGAAATGATGAGAAAGGCAGAAAAGGCTGTTTTGGAGAGCAAAAGTAAAAGTAAAAATGGTGAGAAGGGAGCCTTCTTATGTGGGTTTTCAATGCCTCATGATGGACCAATTGACATGAGGAAGCGTGGATATCAGATGATTTCTGGGGCTGTTGATATTGGTTTGTTTAGAACTGCTGCTGTTGAGGATGTGAGGAAGTTTAGAATGAGCGAAATGGAAGACTCTGAGGATTTGGATCAGCCTCTTACTCACAAGGAAGAGGATGAAGAAGATAAGTTTCTTCAGCATGTTGTGATTTTGTTGCAGATCCATAGTGTAATCTGCTATCGGTACAAAGTTGGAGATTTGGATTCTTGGGGTCTTCCCACTTCTGAAAATCCAAAGATCTATATGTATTGGTCTAAATATCACTCTCTCAAGATTGGCGATTCTCTGATGTTCTTGTATCCACCAAGCCAAGATTCAGTGATTCAAGTTACAAAGGAATCTTACAACAGCTGCAATCTCAAGGATCCAATCTTGTCCATGAAAGATGGTAACTCTGTTTTCAATATCACTACTTACGAGGATCTGTTCTTCACCAGTGGAGTTGCAGGCCACTGTGAGAAGAATCAGAAGCTTCATATCTCTGTGCTTTCTGGAAATGGTTCTTCTGCAAGCGCTCCATCCTCTGATGGTGCACTTCCTGAAATCTCTCCCTCTTACCCCACTGTTTTTGGTGGAATCCCAGCAGCTCCCATGGCCAATTCCAGCGCCTCCTCTTCCTCTTTGTCAACAAAAATCTCATTTTTTCCTGCCTTGTCCGAAGGTCACTTGTGA 1617 47.37 MAASSISFTLTSPFLASSRLHPTAKPLSFSFAPPFPKSSSPFRTLFPIASNSSSKPSIPSPIDSSSSFAAPSLAFNPTLKSRLRNGETLYGLFLLSFSPTLAEIAGLSGYDFVVVDMEHGYGGISDALPCLRALSATQTPAILRIPESSAAWAKKALDLGPQGIMFPMIDSSKEAKKAVSYCRFPPAGVRGSAHPVVRASKYGIDEGYLTNYEDELLIMCQIESEQAVKKIDDIMEVDGVDCIQMGPLDMSGSMGYLWDPGHKKVREMMRKAEKAVLESKSKSKNGEKGAFLCGFSMPHDGPIDMRKRGYQMISGAVDIGLFRTAAVEDVRKFRMSEMEDSEDLDQPLTHKEEDEEDKFLQHVVILLQIHSVICYRYKVGDLDSWGLPTSENPKIYMYWSKYHSLKIGDSLMFLYPPSQDSVIQVTKESYNSCNLKDPILSMKDGNSVFNITTYEDLFFTSGVAGHCEKNQKLHISVLSGNGSSASAPSSDGALPEISPSYPTVFGGIPAAPMANSSASSSSLSTKISFFPALSEGHL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2844950 2847737 + CmaCh06G005910.1 Cma06g00591 296145

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00591 538 ProSiteProfiles Phytocyanin domain profile. 375 479 IPR003245 GO:0009055
Cma06g00591 538 Pfam HpcH/HpaI aldolase/citrate lyase family 90 323 IPR005000 GO:0003824
Cma06g00591 538 PANTHER PHOSPHOENOLPYRUVATE CARBOXYLASE FAMILY PROTEIN 74 343 - -
Cma06g00591 538 Gene3D - 375 489 IPR008972 -
Cma06g00591 538 PANTHER 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE 74 343 - -
Cma06g00591 538 SUPERFAMILY Cupredoxins 374 478 IPR008972 -
Cma06g00591 538 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 70 334 IPR015813 GO:0003824
Cma06g00591 538 Pfam Plastocyanin-like domain 394 470 IPR003245 GO:0009055
Cma06g00591 538 Gene3D - 74 344 IPR040442 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00591 - - - csv:101213205 548.125
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00591 Cma-Chr6:2844950 Cma02g00095 Cma-Chr2:485515 2.03E-21 dispersed
Cma06g00591 Cma-Chr6:2844950 Cma01g01146 Cma-Chr1:8386163 5.90E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g224 . . . . . . Bma07g01016 . Cmo06g00593 . . . . . . . . . . . . . . . Cla10g00088 Cam10g0088 Cec10g0092 Cco10g0094 Clacu10g0089 Cmu10g0936 Cre10g0350 Cone8ag0534 . . . Lsi07g01117 . . Cme06g02397 . Blo19g00144 . . Bpe08g00893 . . . . . . Cma06g00591 . . . Cpe08g00912 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013647 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00591 Cma_Chr06 FPKM 29.515152 25.993969 19.598099 20.852411 53.628426 46.659889 55.303684 26.722498 26.273762 27.604948