Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00592 ATGGGTGAAACAGAGTTGGGTTTGGTTCTTAATCGCATTTGCAGCGGTAATCGATGGTCTTATGGTGTTTTTTGGAGCTTTGATCGAAGAAATTCCATGTTGTTGACTTTGGAAGATTTTTGGTATGAAGAGCAAGTGGGGCTGGTGGCCACAAATATGCTTCAACAAGTTCACATGCTTGGTGAAGGAGTCATTGGCACAGCTGCTTTCACTGGAAAGCACAGATGGACCATTGCAGTAATTCCTGTTCAACCGTATGGAGTTCTACAGCTCGGTTCTACTCATAAGATCTTGGAAAGTTTGGAGTTTTTGGCAGACGCAAAGAAGTCGTTGTGTCGAGTACATGAGGAACCTACTCCACTGGCTTCGAACACCGATATCCGTCACGTTAACGAGCTTTTCACGTCCATCGTCTCGTCTACAAATTCCGATGACTGGAGTCTCAGTGCCATGCATACAAACTTCTCAGGGAAATCATATGCTTCAACTGATAAACAACCAGTCTACGATACGTCGTGCTTCAGTAAAAGTAGCGAGAATTCCGTGTTAACTTCACCCGAGCCACTGCCAACATCCGATGTTCGAGAACAAGATGCTCAATATCCAAGTTACTCAGATGCTAATATGCTCGAATCTTGTAGAAACGAAACGGAATATGGAAACAATAGCACGACATTCACACCCGTCTCGAGTGGAATAGGTTCTCTCCCTATCGACATTGTTCAACCGTCGTCTCAGTTACTTCCCATGAATGAAGGTGAACTTATAGACAGCATAACGAGCCTACCCGACTTCTGTGATGAGCGTCTTACCGAGGATTCATTCGTGGATGATTTATTTCAGTGGTTTGATTCTTCACCAGAGATCGGAACCGATGGAGTAACTACAGCATTGAACCATAGCCTTCCCACCGGAGTTTCAACATTGTCGTCTAATTTAGTTGAAGCTCGTAAGTTCGAAGACGATCCGAGCAAAACGTCGGTTGTCTCTGCCCAAAGTCTAATAACTAATGGACAAGATATGCAGGATACAAAAGATAGACTCTTTGATAGTTTGGGGTTAGCTACAGGATGCCCAGTGGTCAAAACTTGGGATAACATAATAACCGAAGCTCATGGCAGCTACTCGGGCGGGTGCAACAGTATGTCGACGTGCACGTCGAAGTTAGCCACGGGGTCATCGGATCTCCCCCGCAAGAGATTATTCTGGGAGTTGGGAATTGAAGAACTTTTGGATGGTCTAAGTAACACTAGCTCTGCTACTAAATCAAGTATTGAGAATCATCAAACGATTGCCTCGAAAAGGTCGAAAATGGAAAGATCGTCACTCGACCGTTGCATTGACGTGAATCTGACACAACCGTTGTGCATGGTTGATAGTTTCCCGAGTACGAACGAAGCTGTACCAAAGTCACGAGTAAGTTCATGGATCGACGACAGCTATAGCATCAATATTGGAGGCTCCATCTTAGAACCATCCCATAAGAGTGAAGAGCCTGCTAAGACTTTTAAGAAAAGGGCTAGACCGGGAGAGAGTAACCGTCCGAGACCGAAGGATCGACAACAGATCCAAGATCGTATCAAAGAGTTACGAGGAATTATCCCGAGTGGTGCAAAGTGTAGCATCGACTCGTTGTTGGATCGAACGATCAAATACATGCTTTTCTTACAAAGCGTGACGAAATACGCCGATAAGCTTAAAGAAACTAACGAACCAAAGTTAATTGACCAAGAGAACGGAGTGGGTGTAAGTGACAAATATACGACGGAGAGAGGAGGTGGCGGGGTTACCTGGGCGTTCAAATTGGGATCGATGCCAATGGTTTGCCCTGTTATAGTCGAAGACCTTAGTTCACCTGGCCAAATGCTAATAGAGATGCTATGTGAGGAAAGAGGGCTCTTTCTCGAGATAGCCGAGATGATTCGTAGCTATGGATTGACGATTTTGAAAGGCGTGATGGAAGTTCGAGAGGAGAAGATATGGGCTCAGTTTGTGGTCGAGGTGAAGCTAAATGCTAACCGGAGCGTTACAAGGATAAACGTGTTTGTATCGCTTATGGAGCTTCTACAACAAGCAAACATTGGGGGAGCTGAGATAGCTAATGAGTCAAGTAATGTTCCTATAATGGATAGCTTTGACAAGGCCATAACACAAAGTGGATATGCATATATGAAGAGTAGATCAGAGCTGAGAATCATGGAAACCCAATCAGAAGCCGCAGAAGAAAGCATAGCGAGCATCAAAGACAAGCGTCAGCAACTCGAAGCTCGCATTGTAGCCCAACACACGAACCACTTGGAGCTTCTCTCTTCTGTTCAAGCTCAAATTCCTGGTATTGTTTCTTCTCTCGATCTCTCTCTCAAGCTCGTATCCTCCTTCAATGGACGCTCCTTTACTCCCACACCGGTTCTCCCTGAACCCAAGAACAAACCCTCTAAATACCCTTTGTCGAGTAGTGACGCTATGCTCCACAAATCCCGCCCTAATCTTCTTCCGTTAGGAGAAGCGAAACCCGCGATTCAGAAGAATCGGAATGCGAAGTCGTTTCCGGGATTGAATTCCGATCGTAAGCGAGTTCGCCAGCCTGATGGCGGGAAATTTTCGATTGGCGATAGTAGAAGCCCTTTGTCGGTTGTGCGGTCGATGGTGGCGGTTTGTTTACTCGAACGGGTTCATTTTACGGCGATTGATTCTTCGACGGTGTTGAGGAAATTGGAGAATGATCAGAAGGCTACGGCGGCGGAGAAGGCGGCGTTGCGGGAATTAGGGGGAGATTCCGGTGCGATATTGGCGGTGGAGATGGCTTTGAGGTCGATGGTGGAGGATAACGGCGGGGTTGAATTGGAGGAGTTTGTTGTGAGTGGGAAGTCTCGAGTGATGGTGTTGGGGATTGATCGTACTCGGCTTATGAAGGAATTGCCTGAGAGTGCTGATTTTCAGTTGCAGGAATCGAACTCGGGAGAGGGTAATTCCGGCCATAATCAGAACCAGCAAGTGGTGAGTGGTGGTGGTGTGGATGGCAATGGCGGAGTCTTTGGGATGGGAGGGCCAATGCCGAGGCCGATGCCGGAGATGTGGATGGGGCCTGGAGACCCCAATATGCAGGGACTGTCACCCATGTTTCCGGGAAGTGGACCTGCAGGTACAATGGCTGGAGGAAGGGGTCCCCCTGGTATGATGGGAATGATGGGGATGCCTAGAGGGATGGGACTCCCACCATTGCATAGGCCATTGATGGGGCCAAATGTGCCCATGGGTGGCCCCAATTCAATGCCGCAGAAGCCTAAATCTGAGGAGGATGACATGAACGATCTCGAAGCCTTGTTGAACAAGAAGTCGTTTAGAGAATCGCAGAAGTCGAAGACTGGTGAGGAGCTCTTGGACCTAATTCACCGCCCAACTGCCAGGGAAACTGCTGTGGCAGCAAAGTTTAAAACTAAAGGTGGTTCACAACTGAAAGAATACTGCTCATCCTTAACAAAAGAGGACTGTCGGCGTCAATCTGGCTCTTATGTCGCGTGTGAGAAGGTTCATTTTCGGCGAATCATTGCCCCACATACTGACATCAATCTTGGTGACTGCTCTTTTCTTGATACCTGTCGGCACATGAAGACATGCAAGTATGTCCATTACGAACTTGATCCAATTCAAGATGTGCCACCTATGCTTATGGGAGCTGGATCTGTTGCTCCTCCCAAACAACTAAAGCCTCAGCGAGCTGAATATTGTTCGGAGGTAGAACTTGGTGAATCACAATGGATTAACTGTGACATTCGTAATTTTAGAATGGACATTTTGGGGCAATTTGGAGTGATTATGGCAGATCCACCGTGGGATATCCATATGGAATTGCCTTATGGAACAATGGCTGATGATGAAATGCGCAATCTCAACGTTCCTGCGCTACAGACCGATGGTCTGATTTTTCTTTGGGTCACTGGGCGTGCAATGGAACTTGGAAGAGAATGTTTAGAACAATGGGGATACAAGCGTGTTGAGGAGCTTATATGGGTTAAGACAAATCAACTTCAAAGAATTATTAGAACAGGGCGGACTGGCCATTGGCTCAATCATAGTAAGGAGCATTGCCTTGTTGGAATAAAGGGAAATCCAGAAGTTAACAGGAATATTGATACAGATGTTGTTGTTGCGGAGGTTCGAGAAACGAGTCGAAAACCAGACGAGTTCAATAATGAGAACGTATCATTGCAGATGTACCCTTTGCTTGAGAGGATAAGTCCAAGAACAAGAAAGCTAGAATTGTTTGCTCGCATGCACAACACTCATGCAGGGTGGATATCTCTTGGTAATCAATTGAATGGAGTGAGGTTGGTTGATGAAGGACTAAGAGCAAGGTTCAAGGCTGCATATCCGAACGTTGAGGTCCAGCCAGCGTCCCCTCCAAGGGCTTCCATGGAAATTGATTCTGGGGCTGCCCAACTCAGGAGTCCCTTCGCAGGATCAGAATCAAAAGCAGCTTATGGGAACCCTACTACGATTCCTGAGGTACAATATGCAGTGGCTACCCCAGATAAAGCCATTGCAGTAGGAGTTGACACGGCTAACTGA 4569 46.77 MGETELGLVLNRICSGNRWSYGVFWSFDRRNSMLLTLEDFWYEEQVGLVATNMLQQVHMLGEGVIGTAAFTGKHRWTIAVIPVQPYGVLQLGSTHKILESLEFLADAKKSLCRVHEEPTPLASNTDIRHVNELFTSIVSSTNSDDWSLSAMHTNFSGKSYASTDKQPVYDTSCFSKSSENSVLTSPEPLPTSDVREQDAQYPSYSDANMLESCRNETEYGNNSTTFTPVSSGIGSLPIDIVQPSSQLLPMNEGELIDSITSLPDFCDERLTEDSFVDDLFQWFDSSPEIGTDGVTTALNHSLPTGVSTLSSNLVEARKFEDDPSKTSVVSAQSLITNGQDMQDTKDRLFDSLGLATGCPVVKTWDNIITEAHGSYSGGCNSMSTCTSKLATGSSDLPRKRLFWELGIEELLDGLSNTSSATKSSIENHQTIASKRSKMERSSLDRCIDVNLTQPLCMVDSFPSTNEAVPKSRVSSWIDDSYSINIGGSILEPSHKSEEPAKTFKKRARPGESNRPRPKDRQQIQDRIKELRGIIPSGAKCSIDSLLDRTIKYMLFLQSVTKYADKLKETNEPKLIDQENGVGVSDKYTTERGGGGVTWAFKLGSMPMVCPVIVEDLSSPGQMLIEMLCEERGLFLEIAEMIRSYGLTILKGVMEVREEKIWAQFVVEVKLNANRSVTRINVFVSLMELLQQANIGGAEIANESSNVPIMDSFDKAITQSGYAYMKSRSELRIMETQSEAAEESIASIKDKRQQLEARIVAQHTNHLELLSSVQAQIPGIVSSLDLSLKLVSSFNGRSFTPTPVLPEPKNKPSKYPLSSSDAMLHKSRPNLLPLGEAKPAIQKNRNAKSFPGLNSDRKRVRQPDGGKFSIGDSRSPLSVVRSMVAVCLLERVHFTAIDSSTVLRKLENDQKATAAEKAALRELGGDSGAILAVEMALRSMVEDNGGVELEEFVVSGKSRVMVLGIDRTRLMKELPESADFQLQESNSGEGNSGHNQNQQVVSGGGVDGNGGVFGMGGPMPRPMPEMWMGPGDPNMQGLSPMFPGSGPAGTMAGGRGPPGMMGMMGMPRGMGLPPLHRPLMGPNVPMGGPNSMPQKPKSEEDDMNDLEALLNKKSFRESQKSKTGEELLDLIHRPTARETAVAAKFKTKGGSQLKEYCSSLTKEDCRRQSGSYVACEKVHFRRIIAPHTDINLGDCSFLDTCRHMKTCKYVHYELDPIQDVPPMLMGAGSVAPPKQLKPQRAEYCSEVELGESQWINCDIRNFRMDILGQFGVIMADPPWDIHMELPYGTMADDEMRNLNVPALQTDGLIFLWVTGRAMELGRECLEQWGYKRVEELIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGNPEVNRNIDTDVVVAEVRETSRKPDEFNNENVSLQMYPLLERISPRTRKLELFARMHNTHAGWISLGNQLNGVRLVDEGLRARFKAAYPNVEVQPASPPRASMEIDSGAAQLRSPFAGSESKAAYGNPTTIPEVQYAVATPDKAIAVGVDTAN 1522
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2847771 2860171 - CmaCh06G005920.1 Cma06g00592 296146

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00592 1522 PANTHER N6-ADENOSINE-METHYLTRANSFERASE CATALYTIC SUBUNIT 733 1471 - -
Cma06g00592 1522 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 507 556 IPR011598 GO:0046983
Cma06g00592 1522 MobiDBLite consensus disorder prediction 981 1007 - -
Cma06g00592 1522 Coils Coil 902 922 - -
Cma06g00592 1522 ProSiteProfiles MT-A70-like family profile. 1231 1458 IPR007757 -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 488 523 - -
Cma06g00592 1522 Pfam MT-A70 1269 1438 IPR007757 -
Cma06g00592 1522 PANTHER N6-ADENOSINE-METHYLTRANSFERASE 733 1471 - -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 418 437 - -
Cma06g00592 1522 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1249 1403 IPR029063 -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 494 523 - -
Cma06g00592 1522 Coils Coil 730 757 - -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 176 198 - -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 981 1003 - -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 836 871 - -
Cma06g00592 1522 MobiDBLite consensus disorder prediction 798 817 - -
Cma06g00592 1522 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 520 563 IPR036638 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00592 K05925 METTL3; mRNA m6A methyltransferase catalytic subunit [EC:2.1.1.348] - csv:101210377 1300.42
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00592 Cma16g01226 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00592 Cma-Chr6:2847771 Cma10g00865 Cma-Chr10:4242459 5.44E-75 dispersed
Cma16g01226 Cma-Chr16:9279049 Cma06g00592 Cma-Chr6:2847771 0 transposed
Cma16g01225 Cma-Chr16:9273155 Cma06g00592 Cma-Chr6:2847771 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g223 . . . . . . . Bma14g00107 Cmo06g00594 Cmo16g01270 . . . . . . . . . . . . . . Cla10g00089 Cam10g0089 Cec10g0093 Cco10g0095 Clacu10g0090 Cmu10g0937 Cre10g0351 . . . . Lsi07g01118 . . Cme06g02398 Blo03g00810 . Bda07g00146 . . . . . . . . Cma06g00592 Cma16g01226 Car06g00522 Car16g01154 Cpe08g00911 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009638 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00592 Cma_Chr06 FPKM 4.938286 5.174692 5.615888 5.405462 8.947053 8.13818 8.353611 5.288446 5.597007 4.587746