Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00598 ATGGGTTTGAAGGAAGAATTTGAAGAGTATGCTGAAAAGGCAAAGACCTTGTCGGAGAACACAAGCAATGAAAACAAACTCATTCTCTATGGACTATACAAGCAAGCCACTGTTGGAGCCGTGAACACTAGCCGCCCTGGAGTGTTCAACCAGAGGGACAGAGCCAAATGGGATGCCTGGAAGGCCGTTGAAGCAAAATCCAAGGATGATGCAATGAGCGACTATATCACCAAGGTGAAACAGTTGCAAGAGTCAGCTGCAGCTAACTGA 270 46.67 MGLKEEFEEYAEKAKTLSENTSNENKLILYGLYKQATVGAVNTSRPGVFNQRDRAKWDAWKAVEAKSKDDAMSDYITKVKQLQESAAAN 89
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2885724 2887459 - CmaCh06G005980.1 Cma06g00598 296152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00598 89 SUPERFAMILY Acyl-CoA binding protein 3 84 IPR035984 GO:0000062
Cma06g00598 89 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 3 88 IPR000582 GO:0000062
Cma06g00598 89 Gene3D - 1 89 IPR014352 -
Cma06g00598 89 Pfam Acyl CoA binding protein 5 79 IPR000582 GO:0000062
Cma06g00598 89 PRINTS Acyl-coA-binding protein signature 4 19 IPR000582 GO:0000062
Cma06g00598 89 PRINTS Acyl-coA-binding protein signature 21 39 IPR000582 GO:0000062
Cma06g00598 89 PRINTS Acyl-coA-binding protein signature 44 59 IPR000582 GO:0000062
Cma06g00598 89 PRINTS Acyl-coA-binding protein signature 65 82 IPR000582 GO:0000062
Cma06g00598 89 ProSitePatterns Acyl-CoA-binding (ACB) domain signature. 21 39 IPR022408 -
Cma06g00598 89 PANTHER BNAANNG25690D PROTEIN 1 88 - -
Cma06g00598 89 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 1 88 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00598 K08762 DBI, ACBP; diazepam-binding inhibitor (GABA receptor modulator, acyl-CoA-binding protein) - qsu:112025219 154.066
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00598 Cma16g01222 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00598 Cma-Chr6:2885724 Cma15g01020 Cma-Chr15:6305934 1.91E-11 dispersed
Cma16g01222 Cma-Chr16:9233826 Cma06g00598 Cma-Chr6:2885724 9.70E-60 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g898 . . . . . . . Bma14g00118 Cmo06g00604 Cmo16g01265 . . . . . Cpe14g01008 . . . . . . . . Cla10g00097 Cam10g0095 Cec10g0100 Cco10g0101 Clacu10g0096 Cmu10g0943 Cre10g0357 Cone8ag0533 Cone12ag0535 . . . . . Cme06g02406 . . Bda07g00131 . . . . . . . . Cma06g00598 Cma16g01222 Car06g00532 Car16g01149 . . . . . . . . . . . . . . . . . Csa03g00101 Chy06g02204 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008957 1 0 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 0 1 1 1 2 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00598 Cma_Chr06 FPKM 92.622826 86.984604 79.557304 86.399498 129.22316 124.531578 112.215584 93.948639 100.875923 88.911713