Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00600 ATGGAGCTTCTTTCACGGTGTTCTACTCTTGTTCCTCACGCCTCCTCTCTCGGCCATCCGAATTTTCATGGAAAATCTTCAGTTTTCTATCCCAAACGCAAATCCAGCCTCTCATTTCCTTCGTCTTCATCAGTCCTCAAAGCAACCGCTCTTAAACCCTTGAGAGCCCTAGCTCCGCCCTGCTCCGTCCTTATGACGACTCCACAGACGCCGGATTCCGCCCGGAGTGGCGCCGAGACTGATGCCATGGGACTGCTTCTCAGAGAGAGGATCGTTTTCTTGGGGAACAACATTGATGACTTTTTGGCCGATGCCATTATCAGCCAGCTCTTGCTCTTGGATGCTCAGGATTCTTCTAAGGATATCAGACTCTTCATTAATTCCTCCGGCGGCTCTCTGAGTGTAGTTGGTGAAGATGTGGAATATGAGATTCAGGCTGGGAGGACGTTCAGCTTTCAATGTGACTGCTGGGAATTTAGTGCTACAATGGCTATCATCGACGTCTTACAGCTTGTGAGAGCTGATGTCTCCACAATTGCACTGGGCATTGCAGCCTCAACAGCTTCCATAATCCTCGGCGGTGGCACTAAAGGAAAGCGTTTCGCAATGCCTAATGCACGTATTATGGTTCATCAACCTCTTGGAGGGGCGAGTGGCCAAGCAATAGATGTCGAAATTCAAGCACGTGAAATCATGCATAACAAGAACAACGTAATCAGAATTATCTCCAACTACACTGGCCATCCATTTGAGAAGGTCCAAAAAGATATCGATCGGGATCGTTATATGTCGCCCATAGAGGCTGTAGAATATGGATTGATCGATGGAGTGATCGACAAAGACACCATTATACCTCTCATGCAACTGCCAGAAAGAGTGAAGGCAACCCGTTTTTATTCGAAGTTTCTATTGCCGCCATGCTTCAACTCATCAACTGTTTACACAACCGTTGAAGACGAAGATTTCTTTCATCCAGCAACTCCCAATCTGAGGAGCAGAAGGCTGATGTTGAAATTTTCTATAAACAATTCAGCAACTAAACCTCAATCGAAGGATGATGTGAAGAATCCGAATCAGAAACCGCATAATTCGTTCGTTGATCGAACAGGTCGGCTTGTTTCTGGCCCTCAAAAGGCCTTCTCCAGCAGCGTACGCAATATCATGAAAGCGCCATTCCAACGGCTTCATAGAGACACTTGCTATTGGTCATTTTCACGTCGCCATCACGATCTGGCTCTATCTCGTAAGCATTATGTGTCGAATTTAGGCATCTTTCTGTCTCGAAATGATCCAAACATTGGAGCAAGTATCATCATAAAGATGGAAGGAAGGGCTGTTTCAGAGTTGTATAGAAACGCAAGTGAGGAGCTATTTCTTAAATCTTGGGTGGAAAACTCAATCGGAATGTCAACACCAACCATGGAGATGATGGGATTTAAGAATTTTTCTCAGAGCTTTCGTACAGATAGTGAGGAACTCTTCAAAAGCTGGTTCATCAAGCTTTACTGGGTTCAATTGACTGGCAATGGAAATGATAAGATTTTGTCAAGATCCATGGTGGATCCCGAAAATGGAACGGTCCGCAGCAATAACGTGACCAATGTTAACAACTCATCAGGCCTGGCTTATCGCACTCGACAGGCATCGAGAAGAATTGCCTCTGAGACTGTTGAACTGTCTAGTCCTCAGTATGTGGCAAAACATCAAAAGAGAATAAGCAATGATATATTGTATCCACAAAGTGCCTCCGTGGCTGATGATGTCGCAGGAGATAATCAACAAACTTTCAGGGATGTTGTTGAAGGTGAAGTGCAAGGTAGTAACCTCTATCTTGCTAAGGCATGGTTCCATAGTTCTCAACCTATGACAAGAAGTCGATCATCTGAGCTAAGGAGGAGGTATGCTGCAATGCAAAGCAATCAAAGCTCATTCGGCATAGAGTCCATGCATGACTTGTCAGGGCATGGAGCCAACGCGATGAAACTAGATATCACAAATTCACAGAGTTTCATTGACCCTTCTACTTGTGAGATTCCAAACCAGCCTGTTACATTTGTATCCACATCCAATTCATCGGCATCAATGTTCAATGCACCAAACATGTATGATGTAGATAAAATTTCTTCTGTTGTAAACATGCTAAAGGGCACATTAGAACGGAAGAAACTAAATAACCAGATTGAAAAAGTGGCACCGGAGGATAGTTCAAATGCACATTTTGGCAACCTTAGTTTCGATCGAAGCAGTGACAGTTATGTACATCAAATACCGAACAGTCTCGAGGAATTTTCCACTGTTCAAGTCGTGGATAATAGAATTTTACAGACGGTTGAGGGATCAGCAGAGCTCGGTTTCGATGCTTTCGTATATCCTGTAAATCCCATTCAGTCAGGTAGAGTTTCTCAAGAACCTTCTCAAAGTGAATCTTCTGCTGCTGCTGCAGTAGTTTCATCCGGTTTTGAGGCGTGTGGTGGTCTTAGCAACTCAACTCTAACTCATAGCAACGGTGCAAGCTCAAGGAAACAAGTTGCAGGCAATCAGAGCGTAGAAAATGGATCATCACGATCTAAAGTTTCATCCAGTGGGACAGCAGACTTCAGAGAAAGAATAATAGACAACTTAAAAGATGATAGAAAGGCTTATAGTCAGAATAACCTTCTTTTGCTGTCTATGTTGGCATTGATTGCAGAGGAGTGTAATTCGTTCCGGGTCCGTAACATCAGCTGCTTCAGAATGGCAGAGGCGAAGGAGAGGAACATGACACCAACTATTCCATCAGATATGCAATCAGTTCTGAAGCGGTGTGACAATCTTGAGAAGGAAGTGCGATCTAAGAACCAAGTTCTTGATAATGAATGCAGGAAGGATTCTGAGCAGACTAAGCAGATAGAGGATCTTCAGAAGCAGAATGAGGACTTAGCAGATGAAAAAGAATGCCTACTTGAAGAGATTGAGAAGATTCTCTCAGAAACTGGAAGAATAGACAAGTACCTTGAAGCGATAACAGCAAGCCCAGATAAGTCCGGAAAACTTGAGAACAGCTTCTGTAATCATATTTTCTAA 3063 43.78 MELLSRCSTLVPHASSLGHPNFHGKSSVFYPKRKSSLSFPSSSSVLKATALKPLRALAPPCSVLMTTPQTPDSARSGAETDAMGLLLRERIVFLGNNIDDFLADAIISQLLLLDAQDSSKDIRLFINSSGGSLSVVGEDVEYEIQAGRTFSFQCDCWEFSATMAIIDVLQLVRADVSTIALGIAASTASIILGGGTKGKRFAMPNARIMVHQPLGGASGQAIDVEIQAREIMHNKNNVIRIISNYTGHPFEKVQKDIDRDRYMSPIEAVEYGLIDGVIDKDTIIPLMQLPERVKATRFYSKFLLPPCFNSSTVYTTVEDEDFFHPATPNLRSRRLMLKFSINNSATKPQSKDDVKNPNQKPHNSFVDRTGRLVSGPQKAFSSSVRNIMKAPFQRLHRDTCYWSFSRRHHDLALSRKHYVSNLGIFLSRNDPNIGASIIIKMEGRAVSELYRNASEELFLKSWVENSIGMSTPTMEMMGFKNFSQSFRTDSEELFKSWFIKLYWVQLTGNGNDKILSRSMVDPENGTVRSNNVTNVNNSSGLAYRTRQASRRIASETVELSSPQYVAKHQKRISNDILYPQSASVADDVAGDNQQTFRDVVEGEVQGSNLYLAKAWFHSSQPMTRSRSSELRRRYAAMQSNQSSFGIESMHDLSGHGANAMKLDITNSQSFIDPSTCEIPNQPVTFVSTSNSSASMFNAPNMYDVDKISSVVNMLKGTLERKKLNNQIEKVAPEDSSNAHFGNLSFDRSSDSYVHQIPNSLEEFSTVQVVDNRILQTVEGSAELGFDAFVYPVNPIQSGRVSQEPSQSESSAAAAVVSSGFEACGGLSNSTLTHSNGASSRKQVAGNQSVENGSSRSKVSSSGTADFRERIIDNLKDDRKAYSQNNLLLLSMLALIAEECNSFRVRNISCFRMAEAKERNMTPTIPSDMQSVLKRCDNLEKEVRSKNQVLDNECRKDSEQTKQIEDLQKQNEDLADEKECLLEEIEKILSETGRIDKYLEAITASPDKSGKLENSFCNHIF 1020
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2891334 2906852 + CmaCh06G006000.1 Cma06g00600 296154

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00600 1020 Coils Coil 928 990 - -
Cma06g00600 1020 Hamap ATP-dependent Clp protease proteolytic subunit [clpP]. 66 281 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 CDD S14_ClpP_2 81 277 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 ProSitePatterns Endopeptidase Clp histidine active site. 200 213 IPR033135 -
Cma06g00600 1020 Pfam Clp protease 159 280 IPR023562 -
Cma06g00600 1020 Pfam Clp protease 80 134 IPR023562 -
Cma06g00600 1020 Gene3D - 62 283 - -
Cma06g00600 1020 PANTHER PROTEIN CYCLOPS 440 993 IPR040036 GO:0005634|GO:0036377|GO:0043565
Cma06g00600 1020 PRINTS Clp protease catalytic subunit P signature 81 96 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 PRINTS Clp protease catalytic subunit P signature 199 218 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 PRINTS Clp protease catalytic subunit P signature 256 275 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 PRINTS Clp protease catalytic subunit P signature 178 195 IPR001907 GO:0004176|GO:0004252|GO:0006508
Cma06g00600 1020 MobiDBLite consensus disorder prediction 831 862 - -
Cma06g00600 1020 SUPERFAMILY ClpP/crotonase 80 280 IPR029045 -
Cma06g00600 1020 MobiDBLite consensus disorder prediction 345 368 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00600 - - - cpep:111800819 840.491
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00600 Cma16g01217 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00600 Cma-Chr6:2891334 Cma14g00935 Cma-Chr14:4854558 8.65E-48 dispersed
Cma11g01702 Cma-Chr11:11248774 Cma06g00600 Cma-Chr6:2891334 3.07E-29 dispersed
Cma16g01218 Cma-Chr16:9219185 Cma06g00600 Cma-Chr6:2891334 1.92E-148 transposed
Cma16g01217 Cma-Chr16:9207691 Cma06g00600 Cma-Chr6:2891334 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g888 . . . . . . . . Cmo06g00607 Cmo16g01261 . . . . . Cpe14g01004 . . . . . . . . Cla10g00105 Cam10g0101 Cec10g0108 Cco10g0110 Clacu10g0105 Cmu10g0953 Cre10g0364 Cone8ag0529 . . . Lsi07g01131 . . Cme06g02410 Blo03g00843 . Bda07g00136 . . . . . . . . Cma06g00600 Cma16g01217 Car06g00535 Car16g01143 . . . . . . . . . . . . . . . . . Csa03g00105 Chy06g02200 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011056 1 0 1 0 0 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00600 Cma_Chr06 FPKM 4.138786 4.886007 0.629138 0.497792 12.943886 11.753984 13.452179 2.458158 1.964129 2.208194