Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00602 ATGGCAGCGTCAATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAGAGGGAATCGACCGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGCAGCGAGAGATACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCTGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATCGAGTTGGACGTGGTAGTGGAAATGTGCGAATTTATTGGTGAACCTGTACCAGCAACGAGATCAGTAACAGGTGCATTTAATGGAAACCCCCAATCCTCTGTGGTGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCATCAATTGCGCCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATGATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGGTCAGTAGCAAAAAACGAAGCTCCCCCAAGGATAATGCCTATTAATGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCCGACCAGTTTTACAACCAGATTGAACCCGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCAAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACCTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGACGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGATTCAGGGATGTTCCCAGTCTTGGCTGTGAAAACTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTTGAGCCAGATTTTCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAATGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTATACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACCGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATACATGATCTCGGACTTCGTGGTACCGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAATATTAGCAATGTTAGCAGCAGAGAATATGTTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACGTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCGAGTATAACAAGTGCTCCTACACATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTTAAATGCCATCAAACTGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCCGCCGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA 2574 43.71 MAASMAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFNGNPQSSVVTSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDDPRPPLNAYACPQPTYQQPPSMYSNRGSVAKNEAPPRIMPINALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPKQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKTGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFENEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGTGNVGGGQFVSPSRNISNVSSREYVTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2913219 2917840 + CmaCh06G006020.1 Cma06g00602 296156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00602 857 Pfam Replication factor-A C terminal domain 546 697 IPR013955 -
Cma06g00602 857 Gene3D - 513 704 IPR012340 -
Cma06g00602 857 PANTHER REPLICATION FACTOR A 1, RFA1 9 739 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma06g00602 857 MobiDBLite consensus disorder prediction 165 229 - -
Cma06g00602 857 SUPERFAMILY Nucleic acid-binding proteins 8 117 IPR012340 -
Cma06g00602 857 SUPERFAMILY Retrovirus zinc finger-like domains 812 843 IPR036875 GO:0003676|GO:0008270
Cma06g00602 857 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 244 703 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Cma06g00602 857 Pfam Replication protein A OB domain 385 488 IPR031657 -
Cma06g00602 857 Gene3D - 8 123 IPR012340 -
Cma06g00602 857 Gene3D - 374 512 IPR012340 -
Cma06g00602 857 Gene3D - 261 370 IPR012340 -
Cma06g00602 857 Pfam Replication factor-A protein 1, N-terminal domain 10 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
Cma06g00602 857 SUPERFAMILY Nucleic acid-binding proteins 261 374 IPR012340 -
Cma06g00602 857 CDD RPA1_DBD_A 264 367 - -
Cma06g00602 857 ProSiteProfiles Zinc finger CCHC-type profile. 781 796 IPR001878 GO:0003676|GO:0008270
Cma06g00602 857 SMART c2hcfinal6 780 796 IPR001878 GO:0003676|GO:0008270
Cma06g00602 857 SMART c2hcfinal6 825 841 IPR001878 GO:0003676|GO:0008270
Cma06g00602 857 MobiDBLite consensus disorder prediction 165 182 - -
Cma06g00602 857 MobiDBLite consensus disorder prediction 197 217 - -
Cma06g00602 857 Pfam OB-fold nucleic acid binding domain 275 360 IPR004365 GO:0003676
Cma06g00602 857 Gene3D - 776 844 - -
Cma06g00602 857 SUPERFAMILY Nucleic acid-binding proteins 527 704 IPR012340 -
Cma06g00602 857 SUPERFAMILY Nucleic acid-binding proteins 380 508 IPR012340 -
Cma06g00602 857 PANTHER REPLICATION PROTEIN A SUBUNIT 9 739 - -
Cma06g00602 857 ProSiteProfiles Zinc finger CCHC-type profile. 826 840 IPR001878 GO:0003676|GO:0008270
Cma06g00602 857 CDD RPA1_DBD_C 530 703 IPR013955 -
Cma06g00602 857 Pfam Zinc knuckle 825 840 IPR001878 GO:0003676|GO:0008270
Cma06g00602 857 CDD RPA1_DBD_B 396 503 - -
Cma06g00602 857 CDD RPA1N 13 110 IPR007199 GO:0003677|GO:0005634|GO:0006260
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00602 Cma16g01216 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00602 Cma-Chr6:2913219 Cma12g01313 Cma-Chr12:10078191 7.51E-17 dispersed
Cma05g01409 Cma-Chr5:10498054 Cma06g00602 Cma-Chr6:2913219 0 transposed
Cma11g00209 Cma-Chr11:1047706 Cma06g00602 Cma-Chr6:2913219 1.64E-86 transposed
Cma16g01216 Cma-Chr16:9204013 Cma06g00602 Cma-Chr6:2913219 0 transposed
Cma16g01215 Cma-Chr16:9203535 Cma06g00602 Cma-Chr6:2913219 5.25E-54 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00602 K07466 - csv:101211358 1462.97