Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma06g00602 | ATGGCAGCGTCAATGGCGCAGTTTAAGCTGACGGAAGGAGCAGTGATGATGATATGCAAGAGGGAATCGACCGCAGAGACGTTCCAGCCGGTTGTGCAAGTAATTGACTTGAAATTGGTTAACACTGCGCAACAATCGGGCAGCGAGAGATACAGATTGTTGCTTTCTGATGGAACACATTACCAGCAAGGAATGTTGGGGACTCAGCTGAATGGATTGGTGAAGTCTGGGAAGTTGCAGAAAGGTTCCATAGTTCAACTGAAGCAATATGTTTGTAACCCCGTTCAAGAACGCCTGATTATAATTGTCATCGAGTTGGACGTGGTAGTGGAAATGTGCGAATTTATTGGTGAACCTGTACCAGCAACGAGATCAGTAACAGGTGCATTTAATGGAAACCCCCAATCCTCTGTGGTGACTTCACCCAGTAGTGGAATAGCTGGTAAAATGAATGTATCTAGTGCATCTTCTGAACTGCCTAAAGTGAATCAATCACATGCATCGCATGTGGGAGCTTATTCAAACACTCCGGAATCTGGAAGATACACTGCATCAATTGCGCCTCCTCTTTACCCTAATAAGACAGATCCTGGAACAAGGTTTAACGGGTCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAAATGGCATATCACAACAATGGATCAGATGATCCAAGGCCACCTCTAAATGCTTATGCTTGTCCTCAGCCAACATATCAGCAGCCACCTTCAATGTACAGCAACAGAGGGTCAGTAGCAAAAAACGAAGCTCCCCCAAGGATAATGCCTATTAATGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACTTCAAAAGGAGAACTTAGACACTACAATAATCCTCGTGGAGATGGGAAAGTGTTTTCATTTGATCTACTTGATGCACACCGTGGAGAAATACGAGTTACGTGTTTCAACATGGTAGCCGACCAGTTTTACAACCAGATTGAACCCGGTAAAGTTTACTTCATTTCTAAAGGAAGCTTGAAACCTGCTCAAAAGAACTTTAACCATCTAAAAAATGACTTTGAAATATTTCTTGAGAGCACATCAACAATCCAACCTTGCTTTGAGGATGACCAATCAATCCCCAAACAGCAGTTCCATTTCCATCAGATTAGTGAGATTGAAGGCATGGACAACAACAGTGTTGTAGATTTAATTGGTGTTGTTACCTCCATTAATCCTTCAACTTCTATAATGAGAAAAAATGGTATCGAGACTCAGAAGAGAACCCTTCAGTTGAAAGATATGTCTGGACGAAGTGTTGAATTGACTCTTTGGGGAAACTTTTGTCAAGCAGAAGGGCAACGATTGCAAAATATGTGCGATTCAGGGATGTTCCCAGTCTTGGCTGTGAAAACTGGTAGGGTGAGTGACTTCAATGGGAAGGCAGTGGGAACCATTTCATCAAGTCAGCTGTCTGTTGAGCCAGATTTTCCTGAGGCTCGTACGCTGAGAGAGTGGTTTGAGAATGAAGGGAGGAGTACTCCGTCTGTGTCTATATCGAGGGAAGTTTCTAGCATAGGCAGGACAGATGTCCGTAAGACCATATCTCAAATAAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCTGATTGGATTACTGTTAGTGCAACCGTTTCATTTATTAAGGTAGACAACTTCTGTTATACAGCATGTCCTATCATGATCGGGGACCGACAATGCAGCAAAAAGGTTACAAATAATGGAGATGGAAAATGGAGATGTGACCGGTGTGATCAGTCTGTTGACGAATGTGATTACAGATACATACTCCAGCTGCAAATACAGGATCATACTGGTTTAACTTGGGTAACTGCATTTCAAGAAGGTGGTGAGGAAATCATGGGCGTACCTGCAAAAAGATTGTATTATTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTTCTTTTTACAAAATTTATCATGAAGCTGAAAATAAAGGAAGAGACTTTTAGTGATGAACAGAGAGTAAGGTCAACAGTGGTGAAAGCAGAAAGCATTAATTTTTCGACCGAGTCCCGATTTCTTCTAGACTTAATGGAAAAGCTCAGGGCAGAGAACGCCAGTTCTGTTACCCCAAAGACAGAAAGCACCATACATGATCTCGGACTTCGTGGTACCGGGAATGTTGGTGGTGGACAGTTCGTGTCACCCAGTCGAAATATTAGCAATGTTAGCAGCAGAGAATATGTTACACCAAACCTAGGTGTTCAGTATGAGAACCAATACAGCAGTTCTAGGCCTTCTCCATCCATGGTGCATAATTCACACACGTACTGCAACAGCTGCGGGGGCTCTGGTCACAGCTCGATGAACTGCCCGAGTATAACAAGTGCTCCTACACATCCCATTGGAGGGGGAATGTATTCAAATCGATCTTCTGGCCCTTCCGGTGGTGGTGTCTCTGGGGAATGCTTTAAATGCCATCAAACTGGGCATTGGGCCAGGGATTGCCCTGGTTTGGCCGCCGTCCCTCCAGCTTATGGTAACAGTGGCTTCACGGCTAGGTAA | 2574 | 43.71 | MAASMAQFKLTEGAVMMICKRESTAETFQPVVQVIDLKLVNTAQQSGSERYRLLLSDGTHYQQGMLGTQLNGLVKSGKLQKGSIVQLKQYVCNPVQERLIIIVIELDVVVEMCEFIGEPVPATRSVTGAFNGNPQSSVVTSPSSGIAGKMNVSSASSELPKVNQSHASHVGAYSNTPESGRYTASIAPPLYPNKTDPGTRFNGSSSLSGSYGDQKMAYHNNGSDDPRPPLNAYACPQPTYQQPPSMYSNRGSVAKNEAPPRIMPINALNPYQGRWTIKARVTSKGELRHYNNPRGDGKVFSFDLLDAHRGEIRVTCFNMVADQFYNQIEPGKVYFISKGSLKPAQKNFNHLKNDFEIFLESTSTIQPCFEDDQSIPKQQFHFHQISEIEGMDNNSVVDLIGVVTSINPSTSIMRKNGIETQKRTLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGMFPVLAVKTGRVSDFNGKAVGTISSSQLSVEPDFPEARTLREWFENEGRSTPSVSISREVSSIGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDNFCYTACPIMIGDRQCSKKVTNNGDGKWRCDRCDQSVDECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGVPAKRLYYLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDEQRVRSTVVKAESINFSTESRFLLDLMEKLRAENASSVTPKTESTIHDLGLRGTGNVGGGQFVSPSRNISNVSSREYVTPNLGVQYENQYSSSRPSPSMVHNSHTYCNSCGGSGHSSMNCPSITSAPTHPIGGGMYSNRSSGPSGGGVSGECFKCHQTGHWARDCPGLAAVPPAYGNSGFTAR | 857 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2913219 | 2917840 | + | CmaCh06G006020.1 | Cma06g00602 | 296156 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma06g00602 | 857 | Pfam | Replication factor-A C terminal domain | 546 | 697 | IPR013955 | - | |
Cma06g00602 | 857 | Gene3D | - | 513 | 704 | IPR012340 | - | |
Cma06g00602 | 857 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 9 | 739 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cma06g00602 | 857 | MobiDBLite | consensus disorder prediction | 165 | 229 | - | - | |
Cma06g00602 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
Cma06g00602 | 857 | SUPERFAMILY | Retrovirus zinc finger-like domains | 812 | 843 | IPR036875 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | TIGRFAM | rpa1: replication factor-a protein 1 (rpa1) | 244 | 703 | IPR004591 | GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310 | |
Cma06g00602 | 857 | Pfam | Replication protein A OB domain | 385 | 488 | IPR031657 | - | |
Cma06g00602 | 857 | Gene3D | - | 8 | 123 | IPR012340 | - | |
Cma06g00602 | 857 | Gene3D | - | 374 | 512 | IPR012340 | - | |
Cma06g00602 | 857 | Gene3D | - | 261 | 370 | IPR012340 | - | |
Cma06g00602 | 857 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 | |
Cma06g00602 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 261 | 374 | IPR012340 | - | |
Cma06g00602 | 857 | CDD | RPA1_DBD_A | 264 | 367 | - | - | |
Cma06g00602 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 781 | 796 | IPR001878 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | SMART | c2hcfinal6 | 780 | 796 | IPR001878 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | SMART | c2hcfinal6 | 825 | 841 | IPR001878 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | MobiDBLite | consensus disorder prediction | 165 | 182 | - | - | |
Cma06g00602 | 857 | MobiDBLite | consensus disorder prediction | 197 | 217 | - | - | |
Cma06g00602 | 857 | Pfam | OB-fold nucleic acid binding domain | 275 | 360 | IPR004365 | GO:0003676 | |
Cma06g00602 | 857 | Gene3D | - | 776 | 844 | - | - | |
Cma06g00602 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 527 | 704 | IPR012340 | - | |
Cma06g00602 | 857 | SUPERFAMILY | Nucleic acid-binding proteins | 380 | 508 | IPR012340 | - | |
Cma06g00602 | 857 | PANTHER | REPLICATION PROTEIN A SUBUNIT | 9 | 739 | - | - | |
Cma06g00602 | 857 | ProSiteProfiles | Zinc finger CCHC-type profile. | 826 | 840 | IPR001878 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | CDD | RPA1_DBD_C | 530 | 703 | IPR013955 | - | |
Cma06g00602 | 857 | Pfam | Zinc knuckle | 825 | 840 | IPR001878 | GO:0003676|GO:0008270 | |
Cma06g00602 | 857 | CDD | RPA1_DBD_B | 396 | 503 | - | - | |
Cma06g00602 | 857 | CDD | RPA1N | 13 | 110 | IPR007199 | GO:0003677|GO:0005634|GO:0006260 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma06g00602 | Cma16g01216 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma06g00602 | Cma-Chr6:2913219 | Cma12g01313 | Cma-Chr12:10078191 | 7.51E-17 | dispersed | |
Cma05g01409 | Cma-Chr5:10498054 | Cma06g00602 | Cma-Chr6:2913219 | 0 | transposed | |
Cma11g00209 | Cma-Chr11:1047706 | Cma06g00602 | Cma-Chr6:2913219 | 1.64E-86 | transposed | |
Cma16g01216 | Cma-Chr16:9204013 | Cma06g00602 | Cma-Chr6:2913219 | 0 | transposed | |
Cma16g01215 | Cma-Chr16:9203535 | Cma06g00602 | Cma-Chr6:2913219 | 5.25E-54 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma06g00602 | K07466 | - | csv:101211358 | 1462.97 |