Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00604 ATGCAGTATCCTGATGATTTTCTAGGTGAAACTTCTGCAGGGCTGGTTTACACAACTACAAAAGTCAAGACTATCACATTGACCTCTGCTGGTCAAAGCCTTTATTATTTGTTCTTATCTTTGTTCCTGATGGGTGATCTCGTTCGCAATCATCTGGTCTGGTACTTCCAACCACTCAGCTGGCTTGGACAGTTCTTCTCAAGGTTCAACATGTTTGGTGGTGTTTGTCATATATTTCCATCTTCTTCCTGTCTTGAAGTTGAAGTTGTGGATTTTGTAATGAATAAAGCTGCACAGTCTGCTCATCATAATTGTTCTGTAAAGAAGACTTGTCTTTGTGCTTCTGTAAGAAAAATGGAGAGGTATATGTTAATCAAGGAAGTTGGTGATGGCACTTTTGGAAGTGTCTGGCGGGCTATCAGTAAGCAGACTGGGGAAGTTGTTGCAATTAAGAAAATGAAGAAAAAGTATTACACTTGGGAGGAGTGTGTCAGTCTGAGAGAAGTGAAGTCATTGCGCAAGATGAATCATCCAAACATTGTCAAACTCAAGGAAGTTATCAGGGAAAATAACATTTTGTACTTTGTATTTGAGTACATGGAATGCAATCTTTATCAACTTATGAAGGATAAAGAAAAGCTCTTCTCAGAAGCTGAAGTGAGAAATTGGTGCTTTCAAGTCTTTCAAGGCCTTGCCTACATGCATCAGCGAGGATACTTTCATCGGGACCTTAAACCAGAAAATTTATTAGTTGCTAAAGACTTAATAAAACTGGCTGATTTTGGGCTTGCTCGTGAAACTAGTGCAGTTCCACCCTATACAGAATATGTTTCAACCCGGTGGTATAGAGCTCCAGAGGTGCTGCTTCAGGCCTATCTTTATGGTCCTAAAGTTGATATGTGGGCAATGGGTGCTATTATGGCAGAGTTGTTCACTCTTCGTCCTCTTTTCCCTGGAGCAAGTGAAATAGACCAAATCTACAAAATTTGCAATGTACTTGGCACCCCAAATATGGATACATGGTCTGATGGAGTTTTTCTTGCAAGGAATATCAATTATCAATTCCCGCAGTTGAATGGAGTTCATCTCTCTGCTGTTATTCCTTCAGCCAGTGAAGATGCTGTCAATCTAATTGCATCACTTTGTTCATGGGATCCATCCAAGAGACCGACAGCTGTAGAAGCCCTCCAACATCCCTTCTTCCAAAGTTGCTACTATGTTCCACCATCTCTTCGTGCTAGAGCTCCAGTTGCTCGGACCCTTCCTTCTGCTGGAACAAAGGATCTCCTGGAGCAGCAAACTGCTAAAAAATATCCTGGCGCTCTATCTGATTCAAGGATCGCTGGCAACTTCTCTCCAAAGGCGCCCTCGTTGTTGTGCGTAGGCGTGCAGAGGAAGTTGGATTTGATGAACCAGAATGATAAAAATATGAAGAGCACTGTTAGACAACCGAAATACCGACCGCCTGTGAGGAACAGCCCTACCAACTCCATCTACAAGGGAAATAATGTGCGTGGAGTTTCAGATGCAGGTGAAAAGTTGGCAAACATGACAATTGCCTCTCGCAGGCCATCGATTGTGCAGCTTCCTCGGCCGATGAAAGCGGGTGTCCTCTGGAGCGGTTCCTCCGGTGATCTGTTAATAAGGCCCGCCCAAGAGATTCAACATGGCAGCAATTACCCCAGGAAGGTTGCAGGTTAA 1701 43.33 MQYPDDFLGETSAGLVYTTTKVKTITLTSAGQSLYYLFLSLFLMGDLVRNHLVWYFQPLSWLGQFFSRFNMFGGVCHIFPSSSCLEVEVVDFVMNKAAQSAHHNCSVKKTCLCASVRKMERYMLIKEVGDGTFGSVWRAISKQTGEVVAIKKMKKKYYTWEECVSLREVKSLRKMNHPNIVKLKEVIRENNILYFVFEYMECNLYQLMKDKEKLFSEAEVRNWCFQVFQGLAYMHQRGYFHRDLKPENLLVAKDLIKLADFGLARETSAVPPYTEYVSTRWYRAPEVLLQAYLYGPKVDMWAMGAIMAELFTLRPLFPGASEIDQIYKICNVLGTPNMDTWSDGVFLARNINYQFPQLNGVHLSAVIPSASEDAVNLIASLCSWDPSKRPTAVEALQHPFFQSCYYVPPSLRARAPVARTLPSAGTKDLLEQQTAKKYPGALSDSRIAGNFSPKAPSLLCVGVQRKLDLMNQNDKNMKSTVRQPKYRPPVRNSPTNSIYKGNNVRGVSDAGEKLANMTIASRRPSIVQLPRPMKAGVLWSGSSGDLLIRPAQEIQHGSNYPRKVAG 566
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2923248 2927781 + CmaCh06G006040.1 Cma06g00604 296158

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00604 566 ProSitePatterns Protein kinases ATP-binding region signature. 128 152 IPR017441 GO:0005524
Cma06g00604 566 Gene3D Transferase(Phosphotransferase) domain 1 201 407 - -
Cma06g00604 566 Pfam Protein kinase domain 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00604 566 SUPERFAMILY Protein kinase-like (PK-like) 116 406 IPR011009 -
Cma06g00604 566 CDD STKc_MAK_like 122 401 - -
Cma06g00604 566 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 119 507 - -
Cma06g00604 566 SMART serkin_6 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00604 566 PANTHER CYCLIN-DEPENDENT KINASE F-4-LIKE ISOFORM X1 119 507 - -
Cma06g00604 566 MobiDBLite consensus disorder prediction 477 498 - -
Cma06g00604 566 ProSiteProfiles Protein kinase domain profile. 122 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma06g00604 566 Gene3D Phosphorylase Kinase; domain 1 112 200 - -
Cma06g00604 566 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00604 K08829 MAK; male germ cell-associated kinase [EC:2.7.11.22] - csv:101210621 830.861
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00604 Cma16g00526 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00604 Cma-Chr6:2923248 Cma11g00298 Cma-Chr11:1477703 1.06E-63 dispersed
Cma08g00407 Cma-Chr8:2334305 Cma06g00604 Cma-Chr6:2923248 8.75E-22 dispersed
Cma16g01213 Cma-Chr16:9188317 Cma06g00604 Cma-Chr6:2923248 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g880 . . . . . . Bma07g00966 Bma14g00111 Cmo06g00611 Cmo16g00575 . . . . . Cpe14g00445 . . . . . . . . Cla10g00110 Cam10g0105 Cec10g0114 Cco10g0115 Clacu10g0111 Cmu10g0958 Cre10g0368 . . . . Lsi07g01139 . . Cme06g02415 Blo03g00840 . Bda07g00139 . Bpe08g01075 . . . . . . Cma06g00604 Cma16g00526 Car06g00539 Car16g01140 . . . . . . . . . . . . . . . . . Csa03g00109 Chy06g02196 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005380 1 2 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68637 PF00069 Pkinase 1.20E-74 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00604 Cma_Chr06 FPKM 37.778797 35.065849 54.093567 56.029148 39.329464 34.272987 43.103706 49.299599 49.431248 49.415916