Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00610 ATGTCATCGAAGGTTGTGTATGAAGGTTGGATGGTGCGGTATGGCCGGCGGAAGATCGGCAGGTCCTTCATTCATATGCGGTACTTCGTGCTTGAATCTCGGTTGCTTGCGTATTATAAGAAGAAGCCTCAGGATAATCAAGTTCCAATTAAGACCATGCTAATAGATGGGAACTGCAGAGTGGAGGATCGTGGCTTGAAGACGCACCATGGTCATATGGTTTACGTCTTGTCTGTTTACAACAAGAAAGAGAAGTACCATCGAATTACGATGGCGGCCTTCAATATCCAAGAAGCATTATTATGGAAGGAGAAAATAGAGCTTGTCATTGATCTGCACCAAGGCTCACAAGTTCCAAACGGGAACAAATTTGTATCTTTTGAATATAAATCTGGGATGGATAATGGGAGAACTGCTTCCTCCTCCGACCATGAAAGCCAGATCAGTGCACAGGAAGATGAGGACGATACTCATCCAAATTTACTGCGAAGGACAACCATTGGAAATGGACCGCCAGAGTCAGTATTTGACTGGACCAGGGAAATAGATTCAGATTTTTCAAATCAGAATGCCAATTGTCAAGCTTTTTCGCGGAAGCATTGGCGTCTAGTTCAGTGCCAAAATGGACTTCGCATATTTGAAGAGCTTGTGGAAGTTGACTACCTGCCAAGGAGCTATAGTAGGGCAATGAAAGCTGTTGGTGTAGTGGAGGCTACTTGTGAGGAAATCTTTGAACTTGTCATGAGCATGGATGGAACACGGTTTGAGTGGGACTGCAGTTTCCAATATGGTAGCTTAGTTGAAGAGGTGGACGGACATACGGCAATACTCTACCACAGGCTCCAGCTAGACTGGTTTCCAATGTTTGTATGGCCTCGTGACCTCTGCTATGTGCGTTATTGGCGGCGTAATGATGATGGAAGTTACGTGGTATTATTTCGCTCAAGGGAGCATGAGAACTGTGGTCCACAACCAGGGCATGTGCGGGCCCATATTGAGAGTGGTGGATTCAACATTTCACCTCTGAAACCTCGAAATGGGAAGCCAAGAACTCAAGTGCAGCATCTCATGCAGATTGATCTGAAAGGATGGGGCGTGGGCTACTTGTCCTCATTTCAGCAACATTGTCTCTTGCAAATGTTAAATAGTGTTGCCGGGCTGCGCGAATGGTTTGCACAAACAGACGAAAGAAATGCTCCTCCGAGAATACCAGTTATGGTAAATATGGCTTCAACTTCAGTTACCACACAGAAGAGCCTGAAAATGCAGGGGTCCAGTGTCCATGCTAGCTCTTCTATCGACCAAATGACTGCTGCAAATAGAAATTCTGTGATGTTGGATGAATATTCTGAAGAAGATGAAGAATTTCAAATACCTGACTGTGAACAAGAGGTGTCCCCAAATGAGCAGGAGAATGATGTCAAGAAAGCAGCCTTGGAAGAAGAATCAACAGATCGAATTGATTTCTCCAGTTTCTCGGGAAGTGTAAGGCATGATGATCGCGATGGTTCTCGAGACTGCTGGAGAATTTCTGATGGGAACAACTTCAGAGTTCGTAGCAAGACCTTTTGTTTCGATAAGACTAAGGTTCCAGCTGGGAAGCATTTAATGGATCTGGTTACTGTTGATTGGCTGAAAGACACAAAAAGAATGGACCACGTTGCCAGGCGGCAAGGCTGTGCAGCTCAAGTCGCTTCAGAAAAAGGTCTTTTCTCTATCGTCATAAATGTGCAAGTACCGGGTTCGACGCACTACAGTATGGTATTTTATTTTGTGACGAAGGAACTAACTCCTGGATCGCTTTTGCAACGTTTTGTTGATGGCGATGATGAATTCCGCAACAGTAGGTTAAAACTCATTCCATCAGTGCCCAAGGGTTCATGGATTGTTCGGCAAAGTGTTGGGAGCACTCCATGCTTATTGGGAAAAGCAGTTGATTGCAACTATATTCGAGGCCCCAAGTATTTAGAAGTGGATGTTGATATTGGCTCTTCGACAGTTGCTAATGGAGTTTTGGGACTTGTCATTGGTGTGATTACAACATTGGTGGTTGACATGGCTTTCCTCATACAGGGAAATACAACAGAAGAATTACCAGAGCGATTACTTGGAGCAGTGCGAATGTCACATATTCAGCTCTCCTCTGCCAAACCCGCTAACTTGGATTCTTATCCATCTGATTGA 2184 44.64 MSSKVVYEGWMVRYGRRKIGRSFIHMRYFVLESRLLAYYKKKPQDNQVPIKTMLIDGNCRVEDRGLKTHHGHMVYVLSVYNKKEKYHRITMAAFNIQEALLWKEKIELVIDLHQGSQVPNGNKFVSFEYKSGMDNGRTASSSDHESQISAQEDEDDTHPNLLRRTTIGNGPPESVFDWTREIDSDFSNQNANCQAFSRKHWRLVQCQNGLRIFEELVEVDYLPRSYSRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDDGSYVVLFRSREHENCGPQPGHVRAHIESGGFNISPLKPRNGKPRTQVQHLMQIDLKGWGVGYLSSFQQHCLLQMLNSVAGLREWFAQTDERNAPPRIPVMVNMASTSVTTQKSLKMQGSSVHASSSIDQMTAANRNSVMLDEYSEEDEEFQIPDCEQEVSPNEQENDVKKAALEEESTDRIDFSSFSGSVRHDDRDGSRDCWRISDGNNFRVRSKTFCFDKTKVPAGKHLMDLVTVDWLKDTKRMDHVARRQGCAAQVASEKGLFSIVINVQVPGSTHYSMVFYFVTKELTPGSLLQRFVDGDDEFRNSRLKLIPSVPKGSWIVRQSVGSTPCLLGKAVDCNYIRGPKYLEVDVDIGSSTVANGVLGLVIGVITTLVVDMAFLIQGNTTEELPERLLGAVRMSHIQLSSAKPANLDSYPSD 727
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2956146 2967956 + CmaCh06G006100.1 Cma06g00610 296164

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00610 727 Gene3D - 1 119 IPR011993 -
Cma06g00610 727 ProSiteProfiles PH domain profile. 4 111 IPR001849 -
Cma06g00610 727 PANTHER ENHANCED DISEASE RESISTANCE-RELATED 4 719 IPR045096 -
Cma06g00610 727 SUPERFAMILY PH domain-like 2 120 - -
Cma06g00610 727 SMART START_1 187 393 IPR002913 GO:0008289
Cma06g00610 727 SUPERFAMILY Bet v1-like 188 365 - -
Cma06g00610 727 PANTHER PROTEIN ENHANCED DISEASE RESISTANCE 2-LIKE 4 719 - -
Cma06g00610 727 Pfam START domain 226 369 IPR002913 GO:0008289
Cma06g00610 727 ProSiteProfiles START domain profile. 201 363 IPR002913 GO:0008289
Cma06g00610 727 CDD START 200 369 - -
Cma06g00610 727 MobiDBLite consensus disorder prediction 147 161 - -
Cma06g00610 727 Pfam Protein ENHANCED DISEASE RESISTANCE 2, C-terminal 508 711 IPR009769 -
Cma06g00610 727 SMART PH_update 5 113 IPR001849 -
Cma06g00610 727 MobiDBLite consensus disorder prediction 135 172 - -
Cma06g00610 727 CDD PH 7 106 - -
Cma06g00610 727 Gene3D - 201 401 IPR023393 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00610 - - - csv:101209463 1413.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02568 Cma-Chr4:17637089 Cma06g00610 Cma-Chr6:2956146 3.57E-101 dispersed
Cma06g00610 Cma-Chr6:2956146 Cma15g00465 Cma-Chr15:2069106 1.01E-112 dispersed
Cma16g01207 Cma-Chr16:9154328 Cma06g00610 Cma-Chr6:2956146 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g803 . . . . . . . . Cmo06g00616 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01143 . . Cme06g02419 . . . . . . . . . . . Cma06g00610 . Car06g00543 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006393 1 0 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 5 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00610 Cma_Chr06 FPKM 20.386806 22.232134 8.456286 8.601506 8.772288 8.441765 7.949166 6.512214 6.447648 6.662945