Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00616 ATGGTGGGCATATTTTCAAGGTTTTCTTCTAGTAGAACAGGGCATCGACGAGCTCAAAGTGCACTTGATGGAAGAGAAGGACTGCCTTCAATCCCAGAAAGTACTGGTGTTAGTGATACCACTGCTGCTGCTGCTTCTCATGGAATTGAAGTGGCTGTGGAGTTCAAGCCTGTTGAACACCCGATCGAGCCTCTCGACAACGACAGGCCAATTCAGTGCCCGTTGCCTGAACCGTCTATTCTGAATGACGGAAGAATATGGAAGGAACGAGTATCGAGTCTTCGAAGAATGCCAGATATGCCTGTCATGAAAGAACCCGAAATCGGTGAGACTAGACCACGGGTAACACGAACAATCTTACCATCAATGAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG 420 47.38 MVGIFSRFSSSRTGHRRAQSALDGREGLPSIPESTGVSDTTAAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSLRRMPDMPVMKEPEIGETRPRVTRTILPSMSAPEHNILNLLEESGI 139
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3005709 3007587 + CmaCh06G006160.1 Cma06g00616 296170

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00616 139 MobiDBLite consensus disorder prediction 8 43 - -
Cma06g00616 139 PANTHER - 1 139 - -
Cma06g00616 139 PANTHER OS02G0697700 PROTEIN 1 139 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00616 - - - csv:101208810 251.521
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00616 Cma16g01198 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00019 Cma-Chr4:92962 Cma06g00616 Cma-Chr6:3005709 2.45E-07 dispersed
Cma16g01198 Cma-Chr16:9119166 Cma06g00616 Cma-Chr6:3005709 1.22E-81 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g758 Blo02g00971 . . Bda08g00646 Bpe05g00513 . . . Cmo06g00623 Cmo16g01245 . . . . . Cpe14g00992 . . . . . . . . Cla10g00120 Cam10g0118 Cec10g0127 Cco10g0127 Clacu10g0124 Cmu10g0971 Cre10g0381 . . . . Lsi07g01153 . . Cme06g02432 Blo03g00890 . Bda07g00070 . . Bpe11g00309 Bma05g00699 . . . . Cma06g00616 Cma16g01198 Car06g00549 Car16g01128 . . . . . . . . . . . . . . . . . Csa03g00124 Chy06g02181 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005832 3 2 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00616 Cma_Chr06 FPKM 17.222607 18.233122 6.730367 6.352127 9.651738 10.165365 7.623151 9.985965 9.731398 11.01728