Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00617 ATGGCCGCTTTACAGTACCTCGATTCGCTTCGTAACTCGCATCCTGAACTCTCCGAATGGTACAATTCGCTCGCAGATCTGTACCAGAAGAAGCTTTGGCATCAGCTCACACTCAAGCTTGAGCAATTTGTCGCCCTGACCGTCTTCCAGGCTGGTGATGCACTGATTCAGTTGTATCACAACTTCATCACTGATTTTGAGACCAAAATCAATCTTCTCAAGCTTGCACATTTTGCAGTGATTGTTTCTCGGCAATATGCAGAGAAAGAAGCTGCTATTAGTTATCTTGAAGGGATAATCGAGAAGCTAAGGAGCACTAAAGAGCAGCGCATAGAGGAGCCCATCCTCTATATTAAGATGCAAATATCTATTTTTAAGCTTGAGCAAGGTGACCGAAAAGAGTGCAAGAAACTTTTGGAGGATGGAAAGAGCACTCTTGACAGCATGACCGACATTGATCCATCTGTCTATGCTAGCTATTACTGGGTTTCATCTCAGTTTTATAAGTTTCGCCAAGAGTTTGCTGAGTTCTATAAAAGTGCTCTTCTTTATCTGGCATATACTTCAGTGGAGTCACTGTCAGACTCTTTTAAATTGGATTTGGCCTTTGATTTGTCTCTTTCTGCACTTCTGGGAGATAACATCTACAACTTTGGGGAGCTTCTTGCACATCCTATTATCAAAAGTCTGTTGGGCACAAAGGTAGAGTGGCTGTACTACATACTTCAGGCATTCAATGCGGGTGATTTAGTTCGCTATCAAGAATTGTGTCAAGTGCATAATGCAGCTTTAAGGGCTCAACCAGCTTTAGTTGAGAATGAGAAGAAACTATTGGAGAAAATCAACATTCTCTGCCTTATGGAAATTATCTTCAGGCATGCAAGCTTTGCTCCTTTCCGGCCATCTGAAGATCGGACTATTCCATTGAAGGTTATAGCAGAAAGGACAAAACTTTCTATAGAGGATGTGGAGCATCTACTAATGAAGAGCCTCTCTGTCCACCTTATAGAAGGTATAATCGATCAAGTCGAGGGGACAGTACATGTTTCCTGGGTGCAACCTAGAGTTCTGGGCATTCAACAGATCAAATCCCTTCGAGACCGGCTAGACAACTGGGTGGATAAAGTACATTCGACTTTGCTTTCAGTTGAGGCCGAGACCCCCGATCTAGTTCCCGCTGCCACTACCTTCGGCAGCAAGAGACATCTGATCGAAATCACTGAGAGCAACGCAGAAGACAACGACTCGAAC 1251 43.65 MAALQYLDSLRNSHPELSEWYNSLADLYQKKLWHQLTLKLEQFVALTVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAISYLEGIIEKLRSTKEQRIEEPILYIKMQISIFKLEQGDRKECKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQFYKFRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNAGDLVRYQELCQVHNAALRAQPALVENEKKLLEKINILCLMEIIFRHASFAPFRPSEDRTIPLKVIAERTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDNWVDKVHSTLLSVEAETPDLVPAATTFGSKRHLIEITESNAEDNDSN 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3009478 3013830 + CmaCh06G006170.1 Cma06g00617 296171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00617 417 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 372 - -
Cma06g00617 417 SUPERFAMILY Winged helix DNA-binding domain 305 355 IPR036390 -
Cma06g00617 417 Pfam PCI domain 238 350 IPR000717 -
Cma06g00617 417 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 HOMOLOG B 1 393 - -
Cma06g00617 417 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 393 IPR035298 -
Cma06g00617 417 SMART PINT_4 272 372 IPR000717 -
Cma06g00617 417 ProSiteProfiles PCI domain profile. 174 354 IPR000717 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00617 K03039 PSMD13, RPN9; 26S proteasome regulatory subunit N9 - csv:101208086 694.886
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g01197 Cma-Chr16:9115028 Cma06g00617 Cma-Chr6:3009478 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g756 Blo02g00972 . Bda06g01241 Bda08g00645 Bpe05g00514 . . . Cmo06g00624 . . . . . . . . . . . . . . . Cla10g00121 Cam10g0119 Cec10g0128 Cco10g0128 Clacu10g0125 Cmu10g0972 Cre10g0382 . . . . Lsi07g01154 . . Cme06g02433 . . . . . . Bma05g00700 . . . . Cma06g00617 . Car06g00550 . . . . . . . . . . . . . . . . . . Csa03g00125 Chy06g02180 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006085 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00617 Cma_Chr06 FPKM 43.429485 42.417107 40.385391 46.186317 41.309292 40.181114 44.597561 50.643612 51.745655 56.319584