Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00618 ATGTCGTCCGAAAACGAAAGAATGGAGGAAGAAAACTGGAGGAAATTGGTGAAGGAGATGCTCCCTCCTGGAGTATCTATCCCGGAAAGTGCTGGTGATTTGGATTACTCCATAGCTATGGAGTATGAAGGTCCACCAGTAATCTATGACGTCCCGAGAGTCGAACCTGTTGATGTGAATCCTCATTCGATTCCAATGGCTGAACCTTTATCTGAATCCCAAAGGTCCATTGCTTGTAATGGTCCTCCGACGATTGAACCGATTCCTTTGCCAGTTTCTCGTATTGTTGGTGTCATGAGTTCCCCTACTCAGAGTCCAAGGGTATCAGGAAGTTCGGAGTCTGTAGTATCCGTCCTGCAAAACCGTGATTTCTCTTCAGCTTCACCTTCTGCCTCCCCAGCTTCGGTTCATAACGTTCCTAGCAATCAACCGAAACAAGTGGTTATCGATGCGAGGAGAGCACCTGTTGTCACTTTTAATACTAGTGTCGATCACTCCCATCGAAAGGAACTTAATGTCGAGAAGCAAGTGTATCCAGAGTACGTCGGAGTTTCAAAAGAGAAGAAGAAAAAGAAAACTCGAGTATGTTATAGGTGTGGGAAAGGAAAGTGGGAAACGAAGGAGTCGTGTTTAGTTTGTGATGCTAAGTATTGCGGTAGCTGTGTCCTTAGAGCCATGGGATCGATGCCTGAAGGGCGTAAATGCGTTACTTGTATCGCTGCTCCTATAGACGAGTCTAAGAGGTCAAAATTGGGCAAGCATTCGAGGGTCTTGTCTCGATTACTTAGTCCTTTAGAAGTCAAGCAGATTATGAAAGCTGAGAAAGAATGTCCTGCTAATCAGCTTCGACCCGAACAGCTGATTGTGAATGGATTACCTCTACGGGCCGAAGAGATGGCCGAATTACTCGGATGCCCTCTTCCTCCACAGAAATTGAAACCTGGTAGATATTGGTACGACAAAGAATCTGGTCTCTGGGGAAAGGAAGGAGAAAAACCAGATAGAATCATTTGTTCGAACTTGAGTTTCACCGGGAAGCTTAGCCCCCATGCAAGCAACGGAAACACCGAAGTTTACATCAATGGTCGAGAAATCACTAGACTCGAACTAAGGGTGCTTAAGTTGGCAAATGTACAATGCCCACGAGACACACATTTTTGGGTCTACGATGACGGTCGGTACGAGGAAGAAGGTCAGAACAATATCAGAGGAAATATTTGGGAGAAGGCTTCGACACGCTTTGTCTGTGCATTGTTCTCATTGCCCGTGCCACACGGTCAACCACCACCTGGAGTGAGAGAAGAGGCTAGCAATTATACAACAGTTCCCAACTATTTTGAGCAACAAAAAAGGATTCAAAAACTTCTGCTCATCGGGATCGAAGGCTCGGGAACTAGCACCGTCTTTAAGCAGGGAAAATTTTTGTATGGGAACAGATTTAATCAAGAAGAGCTTCAAGATATCAAACTTATGATTCAGAGTAACATGTATAAGTATCTCAGCATCCTGCTTGACGGTCGAGAACGCTTTGAGGAGGAGTTCATAAACCGAAAAAAGGCTCCAAATTCTCGGGGGTATCAAGCTCTCGACACTAATGGAGAGAGGGAGGTTAGCGAATGCATATACTCCATCAACTCGAGGTTAAAACATTTTTCCGATTGGCTTCTCGATATCATCGCTACCGGAGATTTGGATGCATTCTTCCCTGCTGCAACTCGCGAGTATGCTCCATTAGTCGAAGAGCTATGGAAAGATCCTGCGATCCAAGAAACGTACAAGAGAAAAAACGAGCTCCACTTCCTTCCCGATGTTGCCGAGTACTTCTTAAGCAGGGCTGTTGAGGTGTCGAGCAATGAATACGAACCTTCCGATCGAGATATCCTCTACGCAGAAGGGGTGACACAAGGGAATGGATTGGCTTTCATGGAATTTTCACTTGACGATCGGAGTCCAATGTCTGAGACCTACATTGATAATCTCGAAGCTCCACCCCCGCCCCTTACTCGATACCAACTTATAAGGGTAAGTGCAAAGGGGATGAATGAAGGGTGCAAGTGGGTAGAGATGTTCGAAGACGTTCGAGTCGTTGTCTTCTGCGTTGCTCTCAGTGATTTCGATCAGATGTCTCTTGCTGCCGAAGGTAGTGGCAGCGGGAACCTATTACAAAACAAGATGATGCAAAGCAAGGAGCTCTTTGAGACAATGGTCCGACACCCTTGCTTCAAAGATACCCCATTTGTTTTGATACTCAACAAGTATGACCTCTTCGAAGAGAAAGTAAACCGGGTATTGTTGAATGTTTGTGAATGGTTTAACGATTTTAGCCCCGTTCAACCACTGCACAACAACCAGTCACTCAGTCATCAAGCGTACTACTACGTAGCCATGAAATTCAAAGACCTTTATCAATCCATCACTGGTCGTAAGCTTTTTGTATGGCAAGCTCGAGCGAGGGACCGAGTGACTATCGACGAAGCATTCAAGTATATAAGAGAAGTTGTCAAGTGGGACGACGAGAAAGAAGAGAACTACTTTGGACCTGAGGATTCCTTCTATAGCACAGGTGAGCTCATCTCCATTTGTTAG 2586 45.4 MSSENERMEEENWRKLVKEMLPPGVSIPESAGDLDYSIAMEYEGPPVIYDVPRVEPVDVNPHSIPMAEPLSESQRSIACNGPPTIEPIPLPVSRIVGVMSSPTQSPRVSGSSESVVSVLQNRDFSSASPSASPASVHNVPSNQPKQVVIDARRAPVVTFNTSVDHSHRKELNVEKQVYPEYVGVSKEKKKKKTRVCYRCGKGKWETKESCLVCDAKYCGSCVLRAMGSMPEGRKCVTCIAAPIDESKRSKLGKHSRVLSRLLSPLEVKQIMKAEKECPANQLRPEQLIVNGLPLRAEEMAELLGCPLPPQKLKPGRYWYDKESGLWGKEGEKPDRIICSNLSFTGKLSPHASNGNTEVYINGREITRLELRVLKLANVQCPRDTHFWVYDDGRYEEEGQNNIRGNIWEKASTRFVCALFSLPVPHGQPPPGVREEASNYTTVPNYFEQQKRIQKLLLIGIEGSGTSTVFKQGKFLYGNRFNQEELQDIKLMIQSNMYKYLSILLDGRERFEEEFINRKKAPNSRGYQALDTNGEREVSECIYSINSRLKHFSDWLLDIIATGDLDAFFPAATREYAPLVEELWKDPAIQETYKRKNELHFLPDVAEYFLSRAVEVSSNEYEPSDRDILYAEGVTQGNGLAFMEFSLDDRSPMSETYIDNLEAPPPPLTRYQLIRVSAKGMNEGCKWVEMFEDVRVVVFCVALSDFDQMSLAAEGSGSGNLLQNKMMQSKELFETMVRHPCFKDTPFVLILNKYDLFEEKVNRVLLNVCEWFNDFSPVQPLHNNQSLSHQAYYYVAMKFKDLYQSITGRKLFVWQARARDRVTIDEAFKYIREVVKWDDEKEENYFGPEDSFYSTGELISIC 861
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3013035 3018651 - CmaCh06G006180.1 Cma06g00618 296172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00618 861 SUPERFAMILY Transducin (alpha subunit), insertion domain 480 630 IPR011025 GO:0007165
Cma06g00618 861 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 451 837 IPR027417 -
Cma06g00618 861 ProSiteProfiles G-alpha domain profile. 451 845 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 Gene3D - 649 843 IPR027417 -
Cma06g00618 861 SMART galpha_1 447 834 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 MobiDBLite consensus disorder prediction 124 143 - -
Cma06g00618 861 Pfam G-protein alpha subunit 449 834 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 27 859 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PANTHER EXTRA-LARGE GUANINE NUCLEOTIDE-BINDING PROTEIN 3 27 859 - -
Cma06g00618 861 CDD G-alpha 453 837 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PRINTS Alpha G protein (transducin) signature 454 469 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PRINTS Alpha G protein (transducin) signature 620 642 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PRINTS Alpha G protein (transducin) signature 693 721 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 PRINTS Alpha G protein (transducin) signature 746 755 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Cma06g00618 861 SUPERFAMILY FYVE/PHD zinc finger 174 239 IPR011011 -
Cma06g00618 861 Gene3D - 481 631 IPR011025 GO:0007165
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00618 - - - csv:101207353 1574.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00618 Cma16g01196 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00746 Cma-Chr1:3993910 Cma06g00618 Cma-Chr6:3013035 0 dispersed
Cma01g01699 Cma-Chr1:11561030 Cma06g00618 Cma-Chr6:3013035 1.99E-45 dispersed
Cma06g00618 Cma-Chr6:3013035 Cma07g00733 Cma-Chr7:3239396 0 dispersed
Cma16g01196 Cma-Chr16:9109705 Cma06g00618 Cma-Chr6:3013035 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g752 . . Bda06g01242 . . Bpe07g00239 . . Cmo06g00625 Cmo16g01243 . . . . . Cpe14g00990 . . . . . . . . Cla10g00122 Cam10g0120 Cec10g0129 Cco10g0129 Clacu10g0126 Cmu10g0973 Cre10g0383 Cone8ag0500 Cone12ag0501 . . Lsi07g01155 . . Cme06g02435 . . . . . . . Bma12g00240 . . . Cma06g00618 Cma16g01196 Car06g00551 Car16g01126 . . . . . . . . . . . . . . . . . Csa03g00126 Chy06g02179 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002284 3 3 2 2 2 1 3 1 1 2 1 1 3 2 2 3 1 3 3 1 2 2 2 2 2 2 2 4 2 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00618 Cma_Chr06 FPKM 19.8559 22.536577 24.215752 24.243114 34.432617 34.903255 33.852398 31.767145 32.621685 30.320461