Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00621 ATGAACGGAGAAGCTGAGCAAAAACCAGAGGCTCGGCGACTCCGAGAACTGGCTGAGACGAAGTTCAGAGATTCCAATCTCAAATCTGCTCTCAAATACGCCAAACGAGCCCACCGCCTCGATCCAAACCTCGACGGCGCCGCTGAAATCCTCACCTCCCTACAGATTCTCCGAGACGCCGCCGGCTCTCCGGACGAATGGTACCGGATTCTTCAGGTGGAGCCCTTCGCTCACATCAACACAATAAAAAAACAGTACAAGAAGCTGGCTCTGCTTCTGCATCCCGATAAGAATCCCTATGCCGGTTCCGAGGAGGCGTTCAAGCTCGTCAGTGAGGCGTTTCGCTTTCTGTCCGACAAGGTTAGGAGGAAGGAGTACGATTTGAAGCTCCGGATACGGATTCAGGACGAGAAGTTTGGAGATGCAGATGCGGAGGTTGCTACGGAGAGCGAAACGTTTTGGACTGCTTGCTCGACTTGCCAATTGTTGCACCAGTTTGAGAAAAGGTACGTAGGCTATAATTTGGTGTGTCCTAGTTGTAGAAAGAGCTTTAAGGCCGTTGAGGTCGTGCATAATGAACCTGAAATTGTGGAAAATGGACACATGGTTAGGGGTAGAAGGTTGAGGAATTTGAGTTCTAGGCAAAATTCTGGTAGTTTTCAGGGATTAGAACCACCTAGCTCGAGAAAAAAAGTGAGTACCACTCAATCGAAGAGAAATTCTTCAGTGAAGAAAACTAGCGGTGAGAAGGAGAAGGGTACGGAAATGAATGGAAAAGCTGTTTCTGTAGAAGATGAACTTAGAAGTGGAGACTTGGAGGAAGAACATGATAGTGATGATGAGATATGGAGTAGAAGAAGATTAAGAAGTGGGAGTATGAGGAAGAAGATGAGTAGTGTTGATGAGGTTTTGGAGAGGTCGAAGTTGAAGCCTGTAAAAATGGAGGAAGAAATGATGACTTTGGCTGAATTACAGTCTCAGGTGATTCGGAAAGCTCGAAAAGAGAAGATGAAACTGAAGTTAAAGGAGGAGGAGGAAGCAGAGGAAAGAGAGAATAAGAGGAAGAAGGGCGTTGAGGATGGTGACGACAACGATGATGACGAGAGGCTAACCTTGAAAGAGATGGAGGGTCTACTACGGATTCGTCGGCAAGAAGCATCGAAGAGGGCCGGGTTCCTGAGAAACGAAAAACAAAGGAACTTGAAGAAGGATGTGAATCTGGAAATTAAGAAGCAAGGATCTTCTTGTGATTTGGATATGATGGTGGAAGATTCAGATTTTTACGATTTTGACAAGGATAGAATGGAGAGAAGTTTCAAGAAAGGGCAAGTTTGGGCTATATACGACGACGACGATGGAATGCCGAGGCATTACGGTTTGATCGAAGAAGTTACTGTAAACCCATTTGAGGTGAAAATGAGTTGGTTGGATGTTCAAAACAATGGGGAAGAAAGGCTACTTTCTTGGGAGAAATTGGGATTTCATGTTTCTTGTGGTAGATTTAAGGTCTCTAAGAAAACAACCATTGATTCATTGAACATTTTTTCTCATGTTGTGGATTGTGAAAGAGCAGCAAGGGAAGTCTACAGGGTTTATCCCAAAAAGGGTTCAGTTTGGGCACTTTACAAAGAACAAGAAGCTTTGGATGCTGAGAAGAAACGAAACGTTTCGAGTAAAGAGAAGCGAACTTACGACATCGCGGTGTTTCTAACAACTTATAGTGAGATGCACGGTTTAAGTATGGCTTATCTCGAGAAAGTTGATGGATACAAGACGATATTCAAGAGAAGGGAGATTGGTTATCATGCTATTAGATGGTTCGGGAAGGACGATATTCAGTTATTTTCGCATCAAATTCCCGCTCGGAAGCTTTCTGTAGACGAGGCATTTGGGCATCTGAAGGGCTGTTGGGAGCTTGATCCAGCATCTCTTCCTTCAGATTTGGAGCAGATAGCATCTGAGTGCAAAACTCCCTTGCTGTTCGTCGACGGTATTCGGGCGATCTAA 2007 44.84 MNGEAEQKPEARRLRELAETKFRDSNLKSALKYAKRAHRLDPNLDGAAEILTSLQILRDAAGSPDEWYRILQVEPFAHINTIKKQYKKLALLLHPDKNPYAGSEEAFKLVSEAFRFLSDKVRRKEYDLKLRIRIQDEKFGDADAEVATESETFWTACSTCQLLHQFEKRYVGYNLVCPSCRKSFKAVEVVHNEPEIVENGHMVRGRRLRNLSSRQNSGSFQGLEPPSSRKKVSTTQSKRNSSVKKTSGEKEKGTEMNGKAVSVEDELRSGDLEEEHDSDDEIWSRRRLRSGSMRKKMSSVDEVLERSKLKPVKMEEEMMTLAELQSQVIRKARKEKMKLKLKEEEEAEERENKRKKGVEDGDDNDDDERLTLKEMEGLLRIRRQEASKRAGFLRNEKQRNLKKDVNLEIKKQGSSCDLDMMVEDSDFYDFDKDRMERSFKKGQVWAIYDDDDGMPRHYGLIEEVTVNPFEVKMSWLDVQNNGEERLLSWEKLGFHVSCGRFKVSKKTTIDSLNIFSHVVDCERAAREVYRVYPKKGSVWALYKEQEALDAEKKRNVSSKEKRTYDIAVFLTTYSEMHGLSMAYLEKVDGYKTIFKRREIGYHAIRWFGKDDIQLFSHQIPARKLSVDEAFGHLKGCWELDPASLPSDLEQIASECKTPLLFVDGIRAI 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3033803 3035823 - CmaCh06G006210.1 Cma06g00621 296175

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00621 668 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 8 652 - -
Cma06g00621 668 Gene3D DnaJ domain 54 146 IPR036869 -
Cma06g00621 668 MobiDBLite consensus disorder prediction 340 370 - -
Cma06g00621 668 Pfam Domain of unknown function (DUF3444) 420 625 IPR024593 -
Cma06g00621 668 Coils Coil 329 356 - -
Cma06g00621 668 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Cma06g00621 668 SUPERFAMILY Chaperone J-domain 62 131 IPR036869 -
Cma06g00621 668 MobiDBLite consensus disorder prediction 211 242 - -
Cma06g00621 668 MobiDBLite consensus disorder prediction 243 269 - -
Cma06g00621 668 CDD DnaJ 66 119 IPR001623 -
Cma06g00621 668 SMART dnaj_3 65 122 IPR001623 -
Cma06g00621 668 MobiDBLite consensus disorder prediction 211 281 - -
Cma06g00621 668 PANTHER BNAC03G44070D PROTEIN 8 652 - -
Cma06g00621 668 PRINTS DnaJ domain signature 68 86 IPR001623 -
Cma06g00621 668 PRINTS DnaJ domain signature 102 122 IPR001623 -
Cma06g00621 668 PRINTS DnaJ domain signature 86 101 IPR001623 -
Cma06g00621 668 Pfam DnaJ domain 66 127 IPR001623 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00621 - - - cmax:111498825 1228.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00621 Cma-Chr6:3033803 Cma14g01435 Cma-Chr14:10999039 4.01E-78 dispersed
Cma06g01544 Cma-Chr6:9676528 Cma06g00621 Cma-Chr6:3033803 4.74E-15 dispersed
Cma06g00621 Cma-Chr6:3033803 Cma06g01688 Cma-Chr6:10394856 6.42E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g740 . . . . . . . . Cmo06g00629 . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi07g01157 . . Cme06g02437 . . . . . . . . . . . Cma06g00621 . Car06g00555 . . . . . . . . . . . . . . . . . . Csa03g00129 Chy06g02177 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013922 1 1 1 0 0 1 1 1 1 0 0 0 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 24
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00621 Cma_Chr06 FPKM 4.810164 5.339391 9.781021 10.467191 12.087735 10.757414 13.45605 17.253201 18.989891 17.113134