Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00624 ATGAGTAGCAGTGAGATGGAGAAACCACCCAAAGACAAGGAGACCAAGACACCGCCGCTTACCACCCAGGAGCAGACTTCAACCACTAGCGCTGGCGCAGTTAATCCCGATTGGTCGGGATTTCAGGCATATTCTCCGATGCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCACCCATATATGTGGGGAGTTCAGCATATTATGCCTCCTTATGGCACGCCTCCACATCCATATGTTGCAATGTACCCCCCTGGTGGCATATATGCTCATCCTTCCATTCCTCCGGGATCGTATCCTTTTAGCCCATTTGCAATGCCCTCTCCAAATGGCATCACTGAAGCCACTGGTAATACAGCAGGCAGCTTAGATGGGGAGGGTAAGCCACCTGAAGTGAAGGAAAAGCTTCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATTACGGGGAAGAACAATGAGCTCGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCTAAAAGTGGTGAGAGTGCTAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGAATCACAACCTAAGTTAGGTTCCAGGCAAGACACTTTGGAAGGTGAAGCATCTCAGAACGGCAACTCCATGCATGGTACTCAAAATGGAGGATCTAATACTCAGGCAATGACTGTCATCCCATTGGCTGCTGCTGGGGCCACGGGAGTCATTCCTGGTCCCACGACCAACTTAAATATTGGAATGGACTATTGGGGTGCATCATCCGCTATCCCTGCAATGCATGGAAAGGTTCCATCAACTCGAGTAGCTGGAGGATTAGTTGGATCTCGGGATAGTGTACAGTCACAGCTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAATAGAGAATCTGCACGGCGATCCCGGTTACGCAAGCAGGCAGAATGTGATGAACTAGGACACCGAGCTGAGGCCTTACAAGAAGAAAATGCCAATCTTAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAATTACTTTCAGAGAATACTTCTCTGAAGGAACGACTCGGTGAAGTTACGGGAAACGAAGAAGTAAAGGCCAGCAGGAACGGCCAGCATTCGAGCAACGAAACCACACAACTTACAGAGTCGGAGGTTGTACAAGTTGGTAACAAGAATTGA 1206 47.84 MSSSEMEKPPKDKETKTPPLTTQEQTSTTSAGAVNPDWSGFQAYSPMPPHGFLASSPQAHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEATGNTAGSLDGEGKPPEVKEKLPIKRSKGSLGSLNMITGKNNELGKTSGTSANGAYSKSGESASEGTSEGSDANSQNESQPKLGSRQDTLEGEASQNGNSMHGTQNGGSNTQAMTVIPLAAAGATGVIPGPTTNLNIGMDYWGASSAIPAMHGKVPSTRVAGGLVGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELGHRAEALQEENANLRSEVNRIRSEYEQLLSENTSLKERLGEVTGNEEVKASRNGQHSSNETTQLTESEVVQVGNKN 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3042042 3048624 + CmaCh06G006240.1 Cma06g00624 296178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00624 401 MobiDBLite consensus disorder prediction 1 42 - -
Cma06g00624 401 SMART brlzneu 295 359 IPR004827 GO:0003700|GO:0006355
Cma06g00624 401 CDD bZIP_plant_GBF1 300 350 IPR045314 GO:0003700|GO:0006355
Cma06g00624 401 MobiDBLite consensus disorder prediction 355 401 - -
Cma06g00624 401 Coils Coil 315 363 - -
Cma06g00624 401 MobiDBLite consensus disorder prediction 113 226 - -
Cma06g00624 401 Pfam Disordered region downstream of MFMR 135 261 - -
Cma06g00624 401 MobiDBLite consensus disorder prediction 1 18 - -
Cma06g00624 401 MobiDBLite consensus disorder prediction 373 401 - -
Cma06g00624 401 PANTHER BZIP TRANSCRIPTION FACTOR FAMILY PROTEIN 1 396 - -
Cma06g00624 401 Pfam bZIP transcription factor 295 357 IPR004827 GO:0003700|GO:0006355
Cma06g00624 401 Pfam G-box binding protein MFMR 1 96 IPR012900 -
Cma06g00624 401 Gene3D - 298 368 - -
Cma06g00624 401 MobiDBLite consensus disorder prediction 146 226 - -
Cma06g00624 401 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 302 317 IPR004827 GO:0003700|GO:0006355
Cma06g00624 401 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 396 IPR044827 GO:0003700|GO:0006355|GO:0043565
Cma06g00624 401 SUPERFAMILY Leucine zipper domain 298 354 IPR046347 GO:0003700|GO:0006355
Cma06g00624 401 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 297 360 IPR004827 GO:0003700|GO:0006355
Cma06g00624 401 MobiDBLite consensus disorder prediction 19 36 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01640 Cma06g00624 CCT
Cma06g00624 Cma16g01193 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00460 Cma-Chr6:2164072 Cma06g00624 Cma-Chr6:3042042 1.65E-08 dispersed
Cma06g00624 Cma-Chr6:3042042 Cma07g00503 Cma-Chr7:2163688 1.81E-62 dispersed
Cma16g01193 Cma-Chr16:9100070 Cma06g00624 Cma-Chr6:3042042 0 wgd
Cma02g01640 Cma-Chr2:9295412 Cma06g00624 Cma-Chr6:3042042 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35188 PF16596 MFMR_assoc 2.90E-50 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00624 K09060 - csv:101206627 711.449