Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00631 ATGGAGCTTTTTCCAGCTCAACCAGATTTGTCTCTTCAAATAAGCCCTCCAAATTCCTCAACAAATTCAAAGCCCTCTTCCAATGGAGGCTGGAGAAGGCAACACCCCATTTCTTCTATGCCTTCTCAAAACCCTTTAGATTTGGTCTCTTGGAACAATAAATTGCCTTCTACTAACCCTTCTTCTTCTTCTTCTTCTAATTTTGACCCTTCTCCTCTTCTTTCTAACCCTAATTCCTCTTCCGATTTCCTCCACCGTCATTTCCCCACCGCTACCACTGCGAATGGTGACGGCGCTGGAACTGGTGGGCTCTTCCACCGCCATCTCCATGATCTTCACCATCAAGGACTTGGATTCTTGAGACCCATTAGGGGAATTCCGGTTTATCAAAACTCTCCTTCTCCTTCCTCTTCCTCGTCCTTTTCGTACCCGATATTTGGTGGCGGTGGTAACGGTGGCAGTGGCGGTCAGTTTAATTATAACGCCGCTCATCGATCAAGGTTCTTGGGGAGGTTTCCGACTAAACGGAACGTCCGAGCGCCGAGAATGCGGTGGACCACCACTCTACATGCTCGTTTTGTTCATGCTGTTAAGCTTTTGGGTGGCCATGAAAGAGCAACACCAAAATCAGTTCTTGAGCTTATGGATGTCAAAGATCTAACCTTGGCTCATGTCAAGTCCCATTTGCAGATGTATAGAACTGTGAAGACCACTGACAGAGCAGCTTCTTCGGGAAATTCCGATGTTTACGATCAAAATGGGTCATCTGGAGATACGACAAATGAAGACATAACGTACGAAAACGAGAAGTCGTCGAGAATTAGGTCGAGTGCTCCAACTACTAATGATGAGCATGGATATCGACAAACCGTGGGAGACGAACAAGATCATCATCATCATCCTCACAAGGACTTCTATTCTCTATGGAGCAATTCTTCGAGGTAA 945 46.03 MELFPAQPDLSLQISPPNSSTNSKPSSNGGWRRQHPISSMPSQNPLDLVSWNNKLPSTNPSSSSSSNFDPSPLLSNPNSSSDFLHRHFPTATTANGDGAGTGGLFHRHLHDLHHQGLGFLRPIRGIPVYQNSPSPSSSSSFSYPIFGGGGNGGSGGQFNYNAAHRSRFLGRFPTKRNVRAPRMRWTTTLHARFVHAVKLLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRAASSGNSDVYDQNGSSGDTTNEDITYENEKSSRIRSSAPTTNDEHGYRQTVGDEQDHHHHPHKDFYSLWSNSSR 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3098366 3100917 - CmaCh06G006310.1 Cma06g00631 296185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00631 314 MobiDBLite consensus disorder prediction 238 262 - -
Cma06g00631 314 Gene3D - 180 237 - -
Cma06g00631 314 MobiDBLite consensus disorder prediction 11 88 - -
Cma06g00631 314 MobiDBLite consensus disorder prediction 271 286 - -
Cma06g00631 314 MobiDBLite consensus disorder prediction 1 95 - -
Cma06g00631 314 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 313 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cma06g00631 314 SUPERFAMILY Homeodomain-like 178 234 IPR009057 -
Cma06g00631 314 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 181 234 IPR006447 GO:0003677
Cma06g00631 314 MobiDBLite consensus disorder prediction 287 305 - -
Cma06g00631 314 MobiDBLite consensus disorder prediction 238 314 - -
Cma06g00631 314 Pfam Myb-like DNA-binding domain 182 233 IPR001005 -
Cma06g00631 314 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00631 - - - csv:101204405 369.392
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma02g01632 Cma06g00631 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00213 Cma-Chr5:902076 Cma06g00631 Cma-Chr6:3098366 5.41E-37 dispersed
Cma06g00631 Cma-Chr6:3098366 Cma14g00875 Cma-Chr14:4531701 1.23E-42 dispersed
Cma16g01184 Cma-Chr16:9056611 Cma06g00631 Cma-Chr6:3098366 2.46E-116 wgd
Cma19g00216 Cma-Chr19:1456269 Cma06g00631 Cma-Chr6:3098366 2.58E-66 wgd
Cma02g01632 Cma-Chr2:9245371 Cma06g00631 Cma-Chr6:3098366 4.32E-71 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g717 . . . . . . . . Cmo06g00638 . Cma02g01632 . Car02g01391 . . . . . . . . . . . Cla10g00132 Cam10g0130 Cec10g0139 Cco10g0139 Clacu10g0135 Cmu10g0982 Cre10g0392 . . . . . . Chy04g00122 . . Blo19g00245 . . . . . . . Cmo02g01676 Cmo19g00231 Cma06g00631 . Car06g00565 . . Cpe15g00191 . . . . . . . . . . . . . . . . . Cme04g00145
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001608 1 1 2 1 2 2 4 2 2 2 2 2 4 3 2 5 2 2 4 2 2 2 2 2 2 2 2 6 2 2 71
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35189 PF00249 Myb_DNA-binding 1.00E-05 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00631 Cma_Chr06 FPKM 5.535383 6.92186 7.212252 8.852219 21.081703 19.340899 20.686136 3.9377 4.111225 4.393278