Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00632 ATGATTGGAGAATTCGTCGTTGGATTTGTGCCAAGAAGTGGAGGGAAGAATTTGCATATCGGGAGAGGACAGAAATGGCGCAAGAGGCTTCAGCTAATGAATTGTGAAGCTACCAACAAAACTGCAGCTGTCAAGAAAATGATGAATAGAAGTGGAGGTGATGCTTTAAGGGCTTCACCTCCATGTGGTGTGAGATTACTTGGTGGCAATTCAGAAACTTTTTCTCGTTCAAGTGGCATGTCAAATGAGAGGGATGTCTTTTCGAAAAGGAGAGTAGATAAGTTTGAATACGATGATTTAGAGTGGACCGAGAAGATTCCAGAATGCCCTGTATATTCTCCGTCAAAGAAGGAGTTTGAGGATCCTTTGATCTATTTGCAAAAGATAGCTCCAGAAGCCTCAAAATACGGCATATGCAAGATTGTCTCGCCACTTGCTGCTTCTGTTCCTGCCGGGGCTGTATTAATGAAGGAGAAACCAGGGTTCAGGTTTACAACGAGAGTACAACCTTTTCGCTTTGCTGAATGGAATACTGATGATCAGGTTACCTTCTACATGAGTGGCAGGAACTATACATTTCGCGATTTTGAAAAAATTGCGAACAAGATATATGCTCGTAGATATAGTAGTTCTGGATGTCTACCTGCCTCATATTTGGAAAAGGAATTTTGGCGTGAAATTGCTAGTGGGAAGACAGAAAGTGTTGAATATGCTTGCGATGTTGATGGTAGTGCCTTTTCATCTTCTCCAACTGATGAGCTTGGGACAAGTAAATGGAATTTAAAGAATCTTTCACGGCTACCCAAGTCCATATTGCGCCTTCTCGAAACTCCAATTCCGGGAGTCACGGACCCCATGCTCTATATTGGAATGCTGTTCAGTATGTTTGCTTGGCATGTGGAAGATCATTATCTATACAGTATTAATTATCATCATTGTGGGGCATCTAAAACTTGGTATGGCATTCCTGGTCAAGCAGCTTTGCAGTTTGAAAATGTGGTCAGGGAGCATGTATACACTAGCGATATCTTATCCACTGGTGGAGAGGATGGAGCATTTGATGTTCTTCTGGGGAAAACAACGTTGTTTCCACCAAGTATTTTGTTGGATCATGAGGTGCCTGTATACAGAGCTGTCCAGCAACCTGGGGAGTATGTAATTACCTTCCCCAGAGCATATCATGCTGGATTTAGTCATGGCTTCAATTGTGGTGAAGCAGTAAACTTTGCAATGGGTGATTGGTTCCCTTTGGGAGCTGTTGCCAGCCAGCGGTATGCTCTTCTAAACAGGATGCCTCTAATTCCTCATGAAGAGCTTCTATGTAAAGAGGCAATGCTTCTCTACACAAATTCAGAATTTGAAGAGCAACATTATGCGTGTGTAGAGTTAGACTCTCATTATTCTGTTAAGACTTCTTTTGTACGTATGATTCGCTTCCAGCATCGTGCTCGATGGGCTTTGATGAAATCGAGAACGTGCACTGGCATTTCACCAAATTGCCATGGAACCATCCTTTGCAGCTTATGCAAACGTGACTGCTATATATCATATATTAACTGCAGTTGTTATGGACATCCAGCGTGTCTTCGTCATGATATCAAATCTCTGAACTTCTCATGTGGTAGCAACCGTACACTCTTCTTGTGTGAGGATATTTTAGAAATGGAATCTGCAGCTCAAAAATTTGAGCAGGAATGTGGAACATTGGATGAGATTCATGGACAAACTTATAATGGTGAAGAATTATATTCTTATCCTATGTTAAATTCATTTAAACGAGCTGATGTGGATGGATACACTCCTTATTGCAAGATAGAAGTGCAGTTGAATTCTGAATTTACTACTGCTGCTGCTTCTCTTTGTCGCTTGGGAGAAAATGAGGGTGTTTCCTGTAGCCAACCTACTCAAAGTTGTATCACCGAAAACCATAGACCTGAACCATCAGATCCTTCTCTCTCTTGTGAAGCATCAACTCTTTGTTCAGTTGTAGACTACAATGAATCATTGTCCACAACTAGCCATGTACAAAGAAATTCAAGTTTTGAGCAGTCCTCCGAAATTTCTGTCTGTGCACTTGAAACATCGCCTAACAATTGCTCGAGTACATCTCCGGGCAATATACGTGCATTGGAGATCACCACAATATTAGAACAAGAAAGTGATGATTCTGATGCAGAAATTTTTAGGGTTAAGCGTCGCCCTCTGAAGCTAAATAAAAAGACAGGGAGCGATGCCACATCTTTAAAGCATTTTGCTGGCCAGGATGGCCGCAAACGATTGAAGAGACTCCAAACAAATGGGAATTCTGAGCAACTAACGCCATGGGATTGTCGTGGAACTGACAAATCACGTTGTAAATTCTACCCTTCTACTACGCATAAAGACTCTGCAAGTGATGCGATCGGTAAATCTAGCAAAGGGACCATTCCCATCTCTGCGAAGTACAAGAGATTCATCGACGAGAAACTAGTAAATAGACAGCGCGACTATGAACTTGACAATCACAGGAGGGAAAGGTTTCAGCATGAGATGATGAAAAAGCCCAAACGGCTACCTCCCTCTATGGAGATTGGGTCAAAGCGTCTCAAAATCAGAGGCCCAACATTCTTGGGGCCGGATGAACCAATAGCCTTAAAAAATCGAGGCCATTTGCACACACGGGTGGTGGTGATGATGATTCTTGAAGGTAACCCAAGTCGGTACAGAGCCATTTATCCGCCGTCCTGGGAACAACCTTTGCTGCAGCAGCTGCTCTGCTTTAAGCAGGCAACACATAGAATGTAG 2784 42.6 MIGEFVVGFVPRSGGKNLHIGRGQKWRKRLQLMNCEATNKTAAVKKMMNRSGGDALRASPPCGVRLLGGNSETFSRSSGMSNERDVFSKRRVDKFEYDDLEWTEKIPECPVYSPSKKEFEDPLIYLQKIAPEASKYGICKIVSPLAASVPAGAVLMKEKPGFRFTTRVQPFRFAEWNTDDQVTFYMSGRNYTFRDFEKIANKIYARRYSSSGCLPASYLEKEFWREIASGKTESVEYACDVDGSAFSSSPTDELGTSKWNLKNLSRLPKSILRLLETPIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHCGASKTWYGIPGQAALQFENVVREHVYTSDILSTGGEDGAFDVLLGKTTLFPPSILLDHEVPVYRAVQQPGEYVITFPRAYHAGFSHGFNCGEAVNFAMGDWFPLGAVASQRYALLNRMPLIPHEELLCKEAMLLYTNSEFEEQHYACVELDSHYSVKTSFVRMIRFQHRARWALMKSRTCTGISPNCHGTILCSLCKRDCYISYINCSCYGHPACLRHDIKSLNFSCGSNRTLFLCEDILEMESAAQKFEQECGTLDEIHGQTYNGEELYSYPMLNSFKRADVDGYTPYCKIEVQLNSEFTTAAASLCRLGENEGVSCSQPTQSCITENHRPEPSDPSLSCEASTLCSVVDYNESLSTTSHVQRNSSFEQSSEISVCALETSPNNCSSTSPGNIRALEITTILEQESDDSDAEIFRVKRRPLKLNKKTGSDATSLKHFAGQDGRKRLKRLQTNGNSEQLTPWDCRGTDKSRCKFYPSTTHKDSASDAIGKSSKGTIPISAKYKRFIDEKLVNRQRDYELDNHRRERFQHEMMKKPKRLPPSMEIGSKRLKIRGPTFLGPDEPIALKNRGHLHTRVVVMMILEGNPSRYRAIYPPSWEQPLLQQLLCFKQATHRM 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3109056 3116096 - CmaCh06G006320.1 Cma06g00632 296186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00632 927 SMART cupin_9 256 426 IPR003347 -
Cma06g00632 927 PANTHER LYSINE-SPECIFIC DEMETHYLASE 37 870 - -
Cma06g00632 927 Pfam JmjC domain, hydroxylase 286 409 IPR003347 -
Cma06g00632 927 ProSiteProfiles JmjN domain profile. 109 150 IPR003349 -
Cma06g00632 927 Pfam C5HC2 zinc finger 506 557 IPR004198 -
Cma06g00632 927 Pfam jmjN domain 110 142 IPR003349 -
Cma06g00632 927 PANTHER TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN 37 870 - -
Cma06g00632 927 SMART JmjN_1 108 149 IPR003349 -
Cma06g00632 927 SUPERFAMILY Clavaminate synthase-like 187 442 - -
Cma06g00632 927 Gene3D Cupin 109 473 - -
Cma06g00632 927 ProSiteProfiles JmjC domain profile. 256 426 IPR003347 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00632 - - - csv:101211852 1477.23
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00632 Cma15g01224 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00632 Cma-Chr6:3109056 Cma18g00207 Cma-Chr18:1129465 3.17E-77 dispersed
Cma16g01183 Cma-Chr16:9049460 Cma06g00632 Cma-Chr6:3109056 1.97E-12 transposed
Cma16g01181 Cma-Chr16:9041681 Cma06g00632 Cma-Chr6:3109056 0 wgd
Cma19g00217 Cma-Chr19:1475158 Cma06g00632 Cma-Chr6:3109056 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g327 . . . . . . . Bma14g00076 . . . Cma15g01224 . Car15g01104 . . . . . . . . . . . . . . . . . Cone8ag0485 Cone12ag0310 . . . Csa05g00286 Chy09g01220 . . . . . . . . . . . Cmo15g01289 Cma06g00632 . Car06g00566 . . Cpe13g00159 Bhi12g00252 . . . . . . . . . . . . . . . . Cme09g01757
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001654 1 9 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 1 2 2 4 1 70
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35190 PF02373 JmjC 7.40E-39 CL0029 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00632 Cma_Chr06 FPKM 4.017241 4.010282 0.914563 0.92187 5.329354 5.262187 6.439993 0.0 0.124105 0.27003