Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00637 ATGTGGCTGAAGACAACTTGTAAGTTGCAACGTTGCCCGTCACGGTTTCCGTGCAAAAGGCCGTCCCGTGATGGAAATTCCTCCGTTTCGTTAACGCTCCGTATCGAATCCACATCGAGGCGACGAAGACTTGGGGCACGCACTGTGAGAAAATCCCAAATTCAGAATCAGATTTTCCGGTTCAATTCGTATAGGATTCCGGGTTCCGGATATCGTCGGTTGATTCTGTCTCCGTTCCGGCGGTTTTATCTTAGTCATTTCCAGCGATGTCGTGCAATGTGGGGCGAAGGGATTAGATCTCTTGTGGTTTATCTTCCGTTTGACTTTCTCATTTGGAGGTTTTGTGTTTGGTTGAGATTTGCCCAATCGCAGCAGGTTAGGACTGTTAAAGTCAGCAATGTCTCCTTGGGAGCATCTGAACGAGATATCATGGAGTTTTTTTCCTTTTCTGGTGACATTGAATATCTGGAAATGCAGAGTGAAAGTGAACGGTCTCAAATTGCTTATGTGACATTTAAGGATGTACAAGGAGCTGAGACTGCTGTTCTTCTGTCTGGAGCAACTATAGTGGATCTTTCTGTCAACATCACTCTGTGTCCTGAATATGAGCTCCCTCCAGAAGCTACCGCGGCACCACCTGCCCCAGGAGCTAAAGAACCTGGTGCTGCTGAATCCGCCTTTCGGAAAGCCGAGGATGTGGTTAGCGGCATGCTTGCCAAGGGCTTTATATTGGGTAAAGATGCAGTCAACTCCGCAAAGGCATTTGATGAGAAACATCAATTATCTTCCACGGCCTCAGCCAAAGTTGCTACATTTGATAAGAAAATTGGGTTCACTGAGAAAATTAGTGCTGGTACATCGTTGGTGAGCGACAAAGTTCGGGAAGTCGACCAGAAGTTTCAGGTTTCGGAGAAGACTAAATCAGCATTTGCAGTTGCAGAGGAAAAAGTTAGCACTGCTGGGTCTGCCATTATGAAAAACCGATACATATTGACCGGGACTAGCTGGGTTACTGGCGCTTTCAGTAAGGTAGCCAAGGCAGCTGGAGAGGTTGGTCAGAAAACAAAAGAGAAAGTCGAGGAGTCGGAAGAAGAACAGAGAAAGAAAATGGTCGAAGATTTTGCTCAGGTTCATCTCTCGGAATCCCCTAAAGGAGGAGCAGCAGCAGCATCTGCACCCCCTGAGCCTCAACAACGCCCCAAGCCCGAACCCGCTCAAGAAATCAAATTTCGCCTTCCAAATTGGCTCATTCTTCGGAAAAACCCTTCCAGATTCTTGCCGCATTCCTTAATCCTTCCAATATTTTCACCTCCGATTACGTTCATCGTTCGATCAATCACCCAGAATTCCGGCGACGACGACGAATCAGGAAGTAATAGCATCAAAATGGAGTTAGCAGACAAGATGGTTGGATTTTTGTTATCGCTAACTAGCTTGTCGATATTCACTTACTATACTTTCTGGGTCATTATCCTGCCATTTGTTGATAGTGATCACTTCATCCACAACTATTTCTTACCACAAGAATATGCCATCTTGATACCTGTATTTGCTGGTGTGGTTCTTCTGTGCTTATTAGCCATATTTGTAGGAATAGTGATGCTAAAGTCCAAAAAGAAGAAGGCATGA 1629 45.49 MWLKTTCKLQRCPSRFPCKRPSRDGNSSVSLTLRIESTSRRRRLGARTVRKSQIQNQIFRFNSYRIPGSGYRRLILSPFRRFYLSHFQRCRAMWGEGIRSLVVYLPFDFLIWRFCVWLRFAQSQQVRTVKVSNVSLGASERDIMEFFSFSGDIEYLEMQSESERSQIAYVTFKDVQGAETAVLLSGATIVDLSVNITLCPEYELPPEATAAPPAPGAKEPGAAESAFRKAEDVVSGMLAKGFILGKDAVNSAKAFDEKHQLSSTASAKVATFDKKIGFTEKISAGTSLVSDKVREVDQKFQVSEKTKSAFAVAEEKVSTAGSAIMKNRYILTGTSWVTGAFSKVAKAAGEVGQKTKEKVEESEEEQRKKMVEDFAQVHLSESPKGGAAAASAPPEPQQRPKPEPAQEIKFRLPNWLILRKNPSRFLPHSLILPIFSPPITFIVRSITQNSGDDDESGSNSIKMELADKMVGFLLSLTSLSIFTYYTFWVIILPFVDSDHFIHNYFLPQEYAILIPVFAGVVLLCLLAIFVGIVMLKSKKKKA 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3125927 3133068 - CmaCh06G006370.1 Cma06g00637 296191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00637 542 Pfam Dolichol phosphate-mannose biosynthesis regulatory protein (DPM2) 466 540 IPR009914 GO:0019348|GO:0030176|GO:0030234
Cma06g00637 542 SMART rrm1_1 128 197 IPR000504 GO:0003723
Cma06g00637 542 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 130 189 IPR000504 GO:0003723
Cma06g00637 542 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 125 385 - -
Cma06g00637 542 MobiDBLite consensus disorder prediction 382 405 - -
Cma06g00637 542 CDD RRM_Vip1_like 129 197 IPR034360 -
Cma06g00637 542 Gene3D - 120 197 IPR012677 -
Cma06g00637 542 SUPERFAMILY RNA-binding domain, RBD 124 199 IPR035979 GO:0003676
Cma06g00637 542 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 201 IPR000504 GO:0003723
Cma06g00637 542 PANTHER BINDING PARTNER OF ACD11 1 125 385 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00637 - - - cmos:111431529 453.751
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma06g00637 Cma16g01177 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00637 Cma-Chr6:3125927 Cma20g00925 Cma-Chr20:4526850 7.08E-87 dispersed
Cma16g01179 Cma-Chr16:9019162 Cma06g00637 Cma-Chr6:3125927 5.20E-45 transposed
Cma16g01177 Cma-Chr16:9011699 Cma06g00637 Cma-Chr6:3125927 1.96E-135 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g710 . . . . . . . . Cmo06g00642 Cmo16g01227 . . . . . Cpe14g00976 . Bhi11g00013 . . . . . . Cla10g00137 Cam10g0136 Cec10g0146 Cco10g0146 Clacu10g0140 Cmu10g0987 Cre10g0398 . Cone12ag0564 . . Lsi07g01175 . . Cme06g02453 Blo03g00876 . Bda07g00083 Bda09g00754 Bpe08g00810 Bpe11g00320 . . . . . Cma06g00637 Cma16g01177 Car06g00568 Car16g01110 . . . . . . . . . . . . . . . . . Csa03g00147 Chy06g02162 .
Vvi8g1245 . . . . . . . . Cmo06g00642 . . . . . . . Cpe08g01390 . . . . . . . . . . . . . . . . Cone13ag0544 . . . . Cme04g02223 . . . . Bpe04g00563 Bpe02g00010 . Bma04g00467 . . . Cma06g00637 . Car06g00568 Car14g00397 Cpe03g00383 . . . . . . . . Cla10g01654 Cam10g1701 Cec10g1754 Cco10g1719 Clacu10g1721 Cmu10g2474 Cre10g1852 Lsi03g01720 Csa03g03595 Chy04g01762 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001653 2 4 2 2 2 2 4 2 2 1 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma06g00637 Cma_Chr06 FPKM 22.531916 23.583733 23.922356 23.111 30.429184 26.683958 30.752602 22.177931 22.116697 23.547592