Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00638 ATGAGCTTTCAAGATATCGAGGCTGGTCGTCCGTTTGCTTCTTCGAGGAGAGACCTCGTCAATGGCAAACAAGATCCCACGCAAGCCGTTGCCTCGGGTATTTTTCAGATTAATACTGCCGTCGCTACGTTTCAGAGGCTTGTTAACACCTTGGGAACGCCGAAGGATACTCCCGAGCTACGCGAGAAGCTGCACAAGACCAGGTTACATATTGGACAGTTGGTTAAAGACACCTCTGCTAAACTTAAACAAGCCAGTGAAATAGATCATCACGCTGGAGTTAACGCCAGCAAGAAAATTGCAGATGCTAAGCTTGCAAAAGATTTTCAAGCAGTGTTGAAAGAATTTCAGAAGGCTCAACGACTTGCAGCTGAGAGGGAAACAGCATATACACCGTTTGTTCCCCAGGCAGTTCTACCTTCTAGCTACACAGCCGGTGAGTCAGATGCAAGCTCAGAAAATAATCTTGAACAGCGTGCCCTCCTTGTGGAATCCAGGAGACAAGAGGTCTTGCTGCTGGACAATGAAATTGCCTTCAATGAGGCAATAATTGAGGAAAGAGAACAGGGTATTCATGAAATCCAGCAGCAAATTGGAGAGGTCAATGAAATTTTCAAAGATCTTGCTGTTCTAGTTCATGAACAGGGAGCCATGATTGATGATATTGGATCCAACATAGAGAGTTCCCACGCTGCAACATCACAGGGAACAACTCAGCTTGTCAAAGCTTCAAAGACACAAAGATCAAATTCATCTCTGGCTTGCTTGCTTTTGGTGATATTTGGTATAATCCTTCTCATTGTGATCATAATAGTTGTTGCTTAA 825 44.24 MSFQDIEAGRPFASSRRDLVNGKQDPTQAVASGIFQINTAVATFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSAKLKQASEIDHHAGVNASKKIADAKLAKDFQAVLKEFQKAQRLAAERETAYTPFVPQAVLPSSYTAGESDASSENNLEQRALLVESRRQEVLLLDNEIAFNEAIIEEREQGIHEIQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIESSHAATSQGTTQLVKASKTQRSNSSLACLLLVIFGIILLIVIIIVVA 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3134427 3139489 + CmaCh06G006380.1 Cma06g00638 296192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00638 274 SUPERFAMILY t-snare proteins 24 236 IPR010989 GO:0016020|GO:0016192
Cma06g00638 274 Gene3D - 21 134 - -
Cma06g00638 274 PANTHER SYNTAXIN 5 272 IPR045242 -
Cma06g00638 274 PANTHER SYNTAXIN OF PLANTS PROTEIN 5 272 - -
Cma06g00638 274 CDD SynN 24 158 IPR006011 GO:0016020
Cma06g00638 274 Pfam SNARE domain 218 269 IPR000727 -
Cma06g00638 274 ProSitePatterns Syntaxin / epimorphin family signature. 187 226 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma06g00638 274 SMART tSNARE_6 176 243 IPR000727 -
Cma06g00638 274 CDD SNARE_Qa 184 242 - -
Cma06g00638 274 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 181 243 IPR000727 -
Cma06g00638 274 Pfam Syntaxin-like protein 31 130 IPR006011 GO:0016020
Cma06g00638 274 SMART SynN_4 16 128 IPR006011 GO:0016020
Cma06g00638 274 Gene3D - 174 274 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00638 Cma16g01176 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00638 Cma-Chr6:3134427 Cma12g01045 Cma-Chr12:8277641 7.37E-14 dispersed
Cma16g01176 Cma-Chr16:9005154 Cma06g00638 Cma-Chr6:3134427 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00638 - K08488 bhj:120089793 449.514