Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00646 ATGGTTTCGAGGTCTTATTCTAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGCCTTGGCCGAGAGAAAAAGAGGCTTCCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGATGATGATAGCTGCAACAGTATTGGTTCGGATGCCCCTTCATCGGTCGTGCAAGACCGGATGATTATTGTTGGGAATCAGCTCCCGCTTCGGGCACATCGAGATGAAAATGGAGATTGGGAGTTTAGTATGGATGAGGATTCACTTCTTTTACAGCTTAAAGATGGGCTTGGAGAAGATGTGGAGGTGATTTATATTGGTTGTTTAAGAGAGGAGGTCGATCCAAGGGAGCAAGATGAGGTTGCACAAACTCTTTTGGACCGATTCAAATGTGTCCCAACATTCCTCCCTCCCGAGCTTTTTAGTAAATTTTACCATGGATTCTGTAAGCAACATTTATGGCCATTGTTTCACTATATGCTTCCTCTTTCGCCTGATCTTGGTGGTCGATTTGATAGGTCGCTTTGGCAAGCTTATCTTTCGGTTAATAAGATATTTGCAGATAAAGTTATGGAAGTGATTAGCCCTGATGATGACTTTGTTTGGGTTCATGATTATCATTTGATGGTTTTGCCAACATTTTTGAGGAAAAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCGTTTCCTTCGTCTGAGATTTATCGAACGCTTCCCGTTAGAGATGAACTTCTTCGGGCACTATTGAACTCTGATCTTATTGGCTTCCATACATTTGATTATGCTAGGCACTTTTTATCTTGCTGCAGTAGAATGCTTGGTCTGTCTTACCAATCTAAGCGAGGTTACATCGGGCTTGAATACTACGGTCGTACTGTGAGTATTAAGATTCTTCCTGTCGGTATTCATATCGGTCAGCTCCAAAATGTATTAAATCTCCCCGAGACTGTTTCGAAAGTTGCAGAATTGCAAAATCGGTTCAAAGGTCAAACGGTTTTGCTTGGGGTTGATGATATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCCGAGAGATGGGGTAAAGCTGTGTTAGTACAGATAGCGAACCCTGCACGAGGTAGAGGGAAAGATGTACAGGAAGTTGTGGCTGAAACTACTGCGGCCGTGAATAGGATTAATGCAACATTCAGGAGGCCGGGATATGAGCCTGTGGTTTTGATTAACACTCCCTTGCAGTTTTTCGAGCGAATCGCATACTATTCGATTGCTGAGTGCTGCCTGGTCACTGCAGTGAGAGATGGGATGAATCTCATACCTTACGAGTATATTATATGTCGACAAGGCAATGAGAAGCTCGACAATGTTCTTGAGCTAAATCCTTCGACTGCAAAGAAGAGCATGATAGTGCTGTCTGAGTTTATTGGGTGTTCCCCGTCCCTCAGCGGAGCTATTCGGGTTAACCCATGGAATATTGAAGCTGTCACCGAAGCAATGGATTCTGCCTTGGTAATCCCTGAGGCGGAAAAGCAATTGCGACATGAAAAACATTATAGGTACGTTAGTACACACGATGTTGCGTACTGGGCGCGCAGCTTTTTGCTGGATCTGGGCAGGGCATGCCGAGACCATTCAATGAGGAGATGCTGGGGTATAGGTTTTGGGTTAGGATTTCGAGTGATCGCCCTGGATCCAAATTTCAGGAAGCTTTCAGTTGATCATATTGTTTCGGTTTATAAGAGAACCTGCCACCGGGCGATCTTGTTAGATTATGATGGTATCATGATGCTTCCTGGCTCGATTAGCATGAATCCAACTGCTGAAGCCCTTGGGATCTTGAATAACTTGTGTAAAGATCCTAAGAACGTCGTGTTCCTTGTTAGCGGAAAGGACCGAAAAACTCTGACGGAATGGTTTTCACCGTGCGAAAAGCTTGGACTAGCTGCAGAACATGATTGGGAGACATCTGTAAGTGTGACAGATTTCGACTGGAAACAGATTGCCGAACCCGTTATGCAATTGTATACCGAGACAACCGATGGTTCTACAATCGAAACTAAAGAGAGTGTTCTTGTTTGGAACTACCTTTACGCGGATCCTGATTTCGGATCGTGCCAGGCTAAGGAACTTTTAGATCACCTTGAAAGTGTTCTTGCTAATGAGCCAGTTTCTGTCAAGAGTGGCCAACACATTGTAGAAGGTGTAAACAAGGGTATTGTAGCAGAATATCTCTTGCAAACAATGAGGGAGAAGGGAATGCTTCCTGATTTCGTTCTATGCATTGGAGACGATAGGTCGGACGAGGATATGTTCGAGGTGATAACGAGTGCAAAACCCACCCTTCCTCCCAATGCTGAAGTGTTCGGTTGCACGGTCGGACAGAAACCAAGCAAAGCTAAGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTTCGAGCATGCCGCTCGAGCCACCGCACAGACGACGCCTCATAGAGTGATTATTCTGTACGGCGACCCCGAGAGCTGCGGCGGCGCATATCTGAATTTTGTCCAATCCTCCATTCCGGCCGGCGGCTGCACAGAACTTTGCTCCAAAACTAACACCGTTTCTGTGGATTCAAGTATTGCTAATTGGCATCGTAATTCTCAGTATCAGCTTGATTTTGAGTCGTGTCCTTTATACCCCTTCCAAACAAAAGCTTGGGATCTGTCAGTTACCCTCATTGTCTTAGGCTCAGGGGGTCACACGGTCGAAATGCTCAATGTGTTGTCTGTGCTGCAGAAAGACTTGCTTTCTCCAAGATTCTACATTGCTGCTGCTACCGATGACATGAGTCTTCGAAAAGCTCGCACATATGAACATCAACTGACTCATAAGGCTGGGGCTGAGGTAGACAAGATCGCACAGTTCCTAGGGAAATTCTCTGCAATGGCCCTGGTACCTGTATCCCCATTATGCGCAATTGCATTCATATTCAAGGTTGTGGGGATTAGATGGTCATCAATTTTTTATGTGGAAAGCATTGCAAGAGTGAAGAGATTATCATTGAGTGGGTACATTTTATACAAGTTACACATGGCTGATCAGTTCTTTGTGCAATGGCCACAAATGCACACAAAATATCATGTAGTTGATGATCAAAAACCATACAGATTTGAAAAGTAA 3201 44.61 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDSCNSIGSDAPSSVVQDRMIIVGNQLPLRAHRDENGDWEFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDEVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQNRFKGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGKAVLVQIANPARGRGKDVQEVVAETTAAVNRINATFRRPGYEPVVLINTPLQFFERIAYYSIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDNVLELNPSTAKKSMIVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDSALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLLDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTCHRAILLDYDGIMMLPGSISMNPTAEALGILNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHDWETSVSVTDFDWKQIAEPVMQLYTETTDGSTIETKESVLVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEGVNKGIVAEYLLQTMREKGMLPDFVLCIGDDRSDEDMFEVITSAKPTLPPNAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHAFEHAARATAQTTPHRVIILYGDPESCGGAYLNFVQSSIPAGGCTELCSKTNTVSVDSSIANWHRNSQYQLDFESCPLYPFQTKAWDLSVTLIVLGSGGHTVEMLNVLSVLQKDLLSPRFYIAAATDDMSLRKARTYEHQLTHKAGAEVDKIAQFLGKFSAMALVPVSPLCAIAFIFKVVGIRWSSIFYVESIARVKRLSLSGYILYKLHMADQFFVQWPQMHTKYHVVDDQKPYRFEK 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3189733 3197637 - CmaCh06G006460.1 Cma06g00646 296200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00646 1066 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824|GO:0005992
Cma06g00646 1066 Pfam Trehalose-phosphatase 597 815 IPR003337 GO:0003824|GO:0005992
Cma06g00646 1066 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 830 IPR001830 GO:0003824|GO:0005992
Cma06g00646 1066 Gene3D Glycogen Phosphorylase B; 57 314 - -
Cma06g00646 1066 Gene3D Glycogen Phosphorylase B; 315 531 - -
Cma06g00646 1066 SUPERFAMILY HAD-like 594 825 IPR036412 -
Cma06g00646 1066 TIGRFAM T6PP: trehalose-phosphatase 593 826 IPR003337 GO:0003824|GO:0005992
Cma06g00646 1066 Gene3D - 593 681 IPR023214 -
Cma06g00646 1066 Gene3D - 716 840 IPR023214 -
Cma06g00646 1066 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Cma06g00646 1066 Pfam Oligosaccharide biosynthesis protein Alg14 like 996 1054 IPR013969 GO:0006488
Cma06g00646 1066 Pfam Oligosaccharide biosynthesis protein Alg14 like 919 974 IPR013969 GO:0006488
Cma06g00646 1066 CDD HAD_TPP 595 817 - -
Cma06g00646 1066 CDD GT20_TPS 63 546 IPR001830 GO:0003824|GO:0005992
Cma06g00646 1066 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01042 Cma-Chr4:5399688 Cma06g00646 Cma-Chr6:3189733 0 dispersed
Cma06g00646 Cma-Chr6:3189733 Cma16g01174 Cma-Chr16:8986427 0 dispersed
Cma16g01173 Cma-Chr16:8980934 Cma06g00646 Cma-Chr6:3189733 2.42E-59 dispersed
Cma06g00646 Cma-Chr6:3189733 Cma04g00086 Cma-Chr4:429400 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00646 K16055 - csv:101207192 1622.06