Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00648 ATGAATCTCTGGACCGACGAGAACGCGTCGGCCATGGATGCTTTCACGAACTCCGATCTGTCCTCTTACTGGGCTCCGTCGGCGGCGTCGTCTCAATCTCTCCACCACCCACCTCCGACGCAATCCTCCGCCTCCACCACTACTCCACCGTCCGTCCCCTCCAAGTCTATCGCTGTCTTGAACCAGGAGACTCTGCAGCAGCGCCTCCAGGCGCTCATCGACGGTGCTAGAGAGAGTTGGACGTACGCGATTTTCTGGCAGTCGTCGTATGATTATTCCGGCGGGTCGGTTTTAGGGTGGGGAGATGGGTATTACAAAGGCGAGGAGAATAAAGGGAGAGGAAAAACGAAAATGGTTTCCTCTGCGGCGGAGCAGGCTCACCGGAAGAAGGTGCTCCGGGAGCTTAACTCGTTGATTTCCGGCTCCGCTACCGGACTGGACGATGTGGTGGATGAAGAGGTTACCGACACCGAATGGTTCTTTTTGGTTTCGATGACTCAGTCGTTTGTTAATGGAGTTGGGTTACCGAGTCAGGCGCTTTTAAGCTCCCGGCCGATTTGGATAACCGGCGCCGACCGACTGTCGGCGTCGGCATGTGATCGCGCTAGACAGGGGAGGATCTTCGGGTTGCAGACGATGGTGTGTATTCCATTACCCAACGGCGTCGTCGAAATGGGTTCGACGGAAGCGATTTACATAACGACGGATTTGATGAACAAGGTCAAGACTCTGTTTAATTTCAACAATCTCGAAACGGGTTCTTGGCAATCGGGAACCACCGGCGTCACCGTCGCCGACGAAGGGGAAAACGACCCTTCGTCGTTATGGATCAGTGAGCCGTCGAGCACCATTGAAATGAAGGATTCGATTACCACCACCGTACTTTCCGGCGGCGCGTCGGCTAAGCCAATCCATTCAGAAAATCCCAGTTCGAGCAGCTTAACGGAAAATGCCAGCAGGAAACAAACCCACAGCTTGAATTTCCCCGATTATGCCGCCGCGGCCGCCACCACGAACCCATCATTCAAGTCGGAATCCGGTGGGATGATGAGCTTCGGCAACAAAAGTTTCTTCTCCGGTAACTCACAGAATGAGAAAAAGAAATCTCCGACTAGTCGGAGAAGCACCGACGAAGGGATCCTCTGTTTCACCACCGACGCGATCTTACCCTTTTTCGGCAAGGTAAAATCCGGCGACTCCGACCACTCAGATCCCGAAGCTTCAGCCATTCCAGAAGTGGATAGTTGTATAAAACCATCAGAACCCGAAAAACGACCGAGAAAACGCGGCAGAAAACCGGCGAACGGAAGAGAAGAGCCATTGAATCACGTAGAAGCAGAGAGACAACGCCGGGAAAAACTTAACCAGAAATTCTACGCTCTCCGAGCAGTAGTGCCAAACGTATCAAAAATGGACAAAGCCTCATTGCTCGGCGACACCGTCTCCTACATTAATGAACTGAAATTGAAGCTCGAAATGGCGGAATCAAAGAAGACGGAGATCGAAAAACAGCTAGAATTCATGAAAAAAGACGGCGGAACAGGACGGAAAGACATCGGAAACTACACGAATACAGTAAATGAAGATCTGAAAATGGAGATTCAGGTGAAAGTCATGGGGTCGGACGCGATGATCCGTGTTGAATGCAGTAAAAAGAATCATCCGGCGGCTAGATTGATGGCGGCGTTGAAGGATTTGGATTTGGAAATGATTCACGCGAGTGTTTCTGTAGTGAATGATTTGATGATTCAACAGGCGGCGGTGAAGATGGAGAGCAGAGTTTATACGACGGAGCAGCTGAAAATGGTGCTGATGGCGGAAGTTCGAAGGTGCCGGCGTTGA 1842 51.57 MNLWTDENASAMDAFTNSDLSSYWAPSAASSQSLHHPPPTQSSASTTTPPSVPSKSIAVLNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGSVLGWGDGYYKGEENKGRGKTKMVSSAAEQAHRKKVLRELNSLISGSATGLDDVVDEEVTDTEWFFLVSMTQSFVNGVGLPSQALLSSRPIWITGADRLSASACDRARQGRIFGLQTMVCIPLPNGVVEMGSTEAIYITTDLMNKVKTLFNFNNLETGSWQSGTTGVTVADEGENDPSSLWISEPSSTIEMKDSITTTVLSGGASAKPIHSENPSSSSLTENASRKQTHSLNFPDYAAAAATTNPSFKSESGGMMSFGNKSFFSGNSQNEKKKSPTSRRSTDEGILCFTTDAILPFFGKVKSGDSDHSDPEASAIPEVDSCIKPSEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDTVSYINELKLKLEMAESKKTEIEKQLEFMKKDGGTGRKDIGNYTNTVNEDLKMEIQVKVMGSDAMIRVECSKKNHPAARLMAALKDLDLEMIHASVSVVNDLMIQQAAVKMESRVYTTEQLKMVLMAEVRRCRR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3215044 3216885 + CmaCh06G006480.1 Cma06g00648 296202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00648 613 PANTHER MYC 5 608 IPR045084 GO:0003700|GO:0006355
Cma06g00648 613 MobiDBLite consensus disorder prediction 355 377 - -
Cma06g00648 613 PANTHER TRANSCRIPTION FACTOR MYC2 5 608 - -
Cma06g00648 613 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 65 245 IPR025610 -
Cma06g00648 613 MobiDBLite consensus disorder prediction 417 448 - -
Cma06g00648 613 Coils Coil 484 511 - -
Cma06g00648 613 MobiDBLite consensus disorder prediction 297 322 - -
Cma06g00648 613 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 437 505 IPR036638 GO:0046983
Cma06g00648 613 SMART finulus 444 493 IPR011598 GO:0046983
Cma06g00648 613 Gene3D - 423 488 IPR036638 GO:0046983
Cma06g00648 613 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 438 487 IPR011598 GO:0046983
Cma06g00648 613 MobiDBLite consensus disorder prediction 397 448 - -
Cma06g00648 613 MobiDBLite consensus disorder prediction 29 54 - -
Cma06g00648 613 CDD bHLH_AtAIB_like 435 510 - -
Cma06g00648 613 Pfam Helix-loop-helix DNA-binding domain 442 487 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01614 Cma06g00648 CCT
Cma06g00648 Cma17g00504 CCT
Cma06g00648 Cma17g00504 ECH
Cma06g00648 Cma14g02113 CST
Cma06g00648 Cma16g01157 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00583 Cma-Chr6:2802550 Cma06g00648 Cma-Chr6:3215044 7.56E-19 dispersed
Cma06g00648 Cma-Chr6:3215044 Cma14g02113 Cma-Chr14:14573817 5.40E-68 dispersed
Cma19g00513 Cma-Chr19:6022892 Cma06g00648 Cma-Chr6:3215044 2.07E-21 dispersed
Cma07g01260 Cma-Chr7:6990461 Cma06g00648 Cma-Chr6:3215044 1.15E-06 transposed
Cma10g00730 Cma-Chr10:3309361 Cma06g00648 Cma-Chr6:3215044 3.96E-09 transposed
Cma17g00431 Cma-Chr17:2538941 Cma06g00648 Cma-Chr6:3215044 1.60E-22 transposed
Cma16g01157 Cma-Chr16:8881798 Cma06g00648 Cma-Chr6:3215044 0 wgd
Cma19g00236 Cma-Chr19:1667766 Cma06g00648 Cma-Chr6:3215044 0 wgd
Cma02g01614 Cma-Chr2:9172765 Cma06g00648 Cma-Chr6:3215044 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35193 PF14215 bHLH-MYC_N 1.90E-53 CL0161 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00648 K13422 - csv:101205372 882.478