Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00655 ATGGATTCACGGGAGAGGTCGATGCCTTCTGTTCATCAACCTCAGCCACAATCTACTCCACCCAATAGAATGATGGGAAATGCTTCCTATTCCACCAATTTTCCCAACAACAACAACAATGCTTCCCCATTGATCAACCCCAATTCCACCGCTGCTCAGATGATGTCATCCGCATCGCGATTTCCCTTCAACTCCATGATGGGTTCTGCTTCTAAGCCTTCGGACTCACCTAATGCCGGTTCTTATGACGGATCGCATTCCGAATTGCGTGGTGGTGGCTTCAACATTGATTCCGGGAAGAAGAAGAGAGGCCGCCCGAGGAAGTATTCGCCTGATGGCAACATCGCTTTGGGTTTATCGCCAACCCCCGTCACTTCTTCCGCCGCTCCCGGTGATTCTGCCGGCATGCACTCGGCGGATCCTCGCCCGAAGAAGAACAGGGGACGGCCGCCGGGTACTGGGAAGAAGCAGATGGATGCTTTGGGAACTGGCGGTGTTGGCTTTACCCCTCACGTCATTCTGGTGAAACCCGGTGAGGACATTGCTTCGAAAGTTGTGGCATTTTCACAGCTGGGGCCTCGGACTGTTTGTGTTCTCTCTGCCCATGGTGCTGTCTGCAATGTTACCCTTCATCAACCCACAATGGCCGCTGGCAGTGTGACATATGAGGGCCGATATGAAATCATCTCTCTATCAGGAAACTTCTTGATTTCTGACAGTAATGGCAATCGAAATCGAACTGGTCGCTTAAGCGTGTCTCTAGCAAGTGCGGATGGACAAGTCCTTGGTGGAATTACCGACATGTTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTTCTTGTGGATGGGAAAAAGCTGGACTCAAGTACACAGAAACCTGGGCCATCTTCTACATCACCCAATATGTTAAACTTCAGTGCACCTGCGGCGGCAACAGGCTGCCCCTCTGAAGGTGCATCAAATAATTCATCAGACGATAATGATGGTAGCCCTTTAAGCCGGGCGCCTGGAATCTACACCAATGCCAACCAACCAATTCATAATATGCAGATTGGGTTAGTGTTTTGCATCCCGATGTATAGAGGTAGCTCTTGA 1104 50.27 MDSRERSMPSVHQPQPQSTPPNRMMGNASYSTNFPNNNNNASPLINPNSTAAQMMSSASRFPFNSMMGSASKPSDSPNAGSYDGSHSELRGGGFNIDSGKKKRGRPRKYSPDGNIALGLSPTPVTSSAAPGDSAGMHSADPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVVAFSQLGPRTVCVLSAHGAVCNVTLHQPTMAAGSVTYEGRYEIISLSGNFLISDSNGNRNRTGRLSVSLASADGQVLGGITDMLTAASTVQVIVGSFLVDGKKLDSSTQKPGPSSTSPNMLNFSAPAAATGCPSEGASNNSSDDNDGSPLSRAPGIYTNANQPIHNMQIGLVFCIPMYRGSS 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3231771 3240251 + CmaCh06G006550.1 Cma06g00655 296209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00655 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 82 353 IPR039605 GO:0003680
Cma06g00655 367 MobiDBLite consensus disorder prediction 8 83 - -
Cma06g00655 367 Gene3D - 170 296 - -
Cma06g00655 367 Pfam Plants and Prokaryotes Conserved (PCC) domain 170 282 IPR005175 -
Cma06g00655 367 MobiDBLite consensus disorder prediction 292 309 - -
Cma06g00655 367 MobiDBLite consensus disorder prediction 289 341 - -
Cma06g00655 367 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 82 353 - -
Cma06g00655 367 SUPERFAMILY AF0104/ALDC/Ptd012-like 168 283 - -
Cma06g00655 367 CDD DUF296 169 282 IPR005175 -
Cma06g00655 367 MobiDBLite consensus disorder prediction 318 341 - -
Cma06g00655 367 SMART AT_hook_2 100 112 IPR017956 GO:0003677
Cma06g00655 367 SMART AT_hook_2 144 156 IPR017956 GO:0003677
Cma06g00655 367 ProSiteProfiles PPC domain profile profile. 164 303 IPR005175 -
Cma06g00655 367 MobiDBLite consensus disorder prediction 1 162 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma06g00655 Cma16g01152 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00655 Cma-Chr6:3231771 Cma08g00912 Cma-Chr8:5684400 2.01E-57 dispersed
Cma16g01152 Cma-Chr16:8858536 Cma06g00655 Cma-Chr6:3231771 0 wgd
Cma19g00241 Cma-Chr19:1705112 Cma06g00655 Cma-Chr6:3231771 6.28E-85 wgd
Cma02g01609 Cma-Chr2:9155140 Cma06g00655 Cma-Chr6:3231771 6.90E-116 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00655 - - cmax:111498434 663.685