Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00658 ATGGACCCCACTGATGCCGACCTCGCCGATCCTTCTCATGTCCGCCTTTCCGTTTCCTCTGAACCTTCCTCCGCCTCCGCTGCTGGCGCCAAGTACAAGCTACTGTCTCCGGCTAAGCTCCCGATCTCCAGGTCCCCTTGCATTACCATCCCTCCCGGTCTCAGTCCCACTTCCTTTCTCGAGTCTCCCGTTTTGCTCACCAACTTAAAGGTAGAGCCTTCTCCGACTACCGGGTCCTTTACTAAGCTTCCAATGGCACACGACTCTTCTAGCTCAGCTATTTATTCAATGACCACCATGGCTTTCTCAAATACCCATGCCTCAGACGAAGGAAGATCCAGCTATTTCGAGTTCAAACCTTATGCTGGACCGAATATGGTTCCTGCAGATTTGAGTCATCGGAAAGGCGAGCAATCCAGAGAAGTTCAAGTTCAGGGCCAACCTCAATCATTTACTGCTCCGCCCATGACTAAAAGTGAGATCAATGTCATTTCTAATGATTTGAGTCGGTCGACTCAGATGGATACAGTTGCCTCAAGGGCTAGTGTTCCTGAAGTTGATGGAGACGATTTCAACCATAGTTTGAACACAAATACCAGGGTTCAGCCCCCACAATCTGATCCAAAAGCCAGTGGCATTCAAGTAGTTTCTGATAGATTATCTGATGATGGATATAACTGGCGTAAATATGGACAGAAGCACGTTAAAGGGAGTGAATTTCCGCGTAGCTATTATAAATGTACCCATCCGAACTGTGAAGTGAAAAAACTCTTCGAACGCTCTCATGATGGACAGATAGTCGATATTATCTATAAGGGTACCCATGATCATCCTAAACCTCAGCCAAGTCGGCGATATTCTGCCAGTGCTTCTATGAATGTTCAAGAAGATGGGCCTGATAAGCCTTCACCTTTAACTGGTCAAGATGACAGGTCCTGCGTAATGTATGCTCAGGCGGTGCATACCATTGAGCCAAATGGAACTCCAGAACCATCCCATGCTGCTAATGATAGCATGGCCGAAGGCGTAGGAACAACTCTGCCACCCAGGAGTCATGATGAGGTTGACGATGATGACATATTCTCGAAGCGGAGGAAAATGGAACTTGGAGGTTTTGATGTCTGCCCAATGGTTAAGCCGATCAGGGAACCACGTGTTGTGGTTCAAACTCTAAGCGAGGTTGATATACTGGATGATGGGTATCGCTGGCGTAAATATGGCCAGAAGGTAGTGAGAGGAAACCCGAACCCAAGGAGTTATTACAAGTGCACAAATGTTGGATGCCCTGTTAGAAAACATGTTGAAAGAGCATCCCATGACCCAAAAGCTGTTATAACTACATATGAGGGGAAACATAATCACGACGTTCCCACAGCAAAAACGAGTAGCCATGAGGTCCAAGGCTCATTGACAATTGCACCATCAAGGTATAGACTTGAAGAGAGTGACACCATAAGCCTTGATCTTGGCGTTGGCATTGGCGCCGGTGGTGAGAATAGATCGAACGAATACAGGCAAGCGTTTCATTCTCAACTTGCTGAAAACCAAAATCCAAATGGCAATTTCAACTTCGAAATAGTTCAAGAAAACTCACCCCCAACCTATTTCGGTGTTCTCGATCGGGGTATAAGCCAGCACGGATCAAGAGAGAGTTTGAGCGAAAGCCGCACCATGTCGCTAAACCATTCGTCTCACCCATATCCTCCTAGCATTGAGAGAATACTAACAGGGCCATAA 1737 46.86 MDPTDADLADPSHVRLSVSSEPSSASAAGAKYKLLSPAKLPISRSPCITIPPGLSPTSFLESPVLLTNLKVEPSPTTGSFTKLPMAHDSSSSAIYSMTTMAFSNTHASDEGRSSYFEFKPYAGPNMVPADLSHRKGEQSREVQVQGQPQSFTAPPMTKSEINVISNDLSRSTQMDTVASRASVPEVDGDDFNHSLNTNTRVQPPQSDPKASGIQVVSDRLSDDGYNWRKYGQKHVKGSEFPRSYYKCTHPNCEVKKLFERSHDGQIVDIIYKGTHDHPKPQPSRRYSASASMNVQEDGPDKPSPLTGQDDRSCVMYAQAVHTIEPNGTPEPSHAANDSMAEGVGTTLPPRSHDEVDDDDIFSKRRKMELGGFDVCPMVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNVGCPVRKHVERASHDPKAVITTYEGKHNHDVPTAKTSSHEVQGSLTIAPSRYRLEESDTISLDLGVGIGAGGENRSNEYRQAFHSQLAENQNPNGNFNFEIVQENSPPTYFGVLDRGISQHGSRESLSESRTMSLNHSSHPYPPSIERILTGP 578
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3263898 3268590 + CmaCh06G006580.1 Cma06g00658 296212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00658 578 SUPERFAMILY WRKY DNA-binding domain 389 457 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 ProSiteProfiles WRKY domain profile. 216 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 Pfam WRKY DNA -binding domain 398 454 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 Pfam WRKY DNA -binding domain 222 278 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 MobiDBLite consensus disorder prediction 272 309 - -
Cma06g00658 578 MobiDBLite consensus disorder prediction 323 357 - -
Cma06g00658 578 ProSiteProfiles WRKY domain profile. 392 457 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 SUPERFAMILY WRKY DNA-binding domain 218 280 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 MobiDBLite consensus disorder prediction 546 578 - -
Cma06g00658 578 Gene3D WRKY domain 384 450 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 18 553 IPR044810 GO:0003700
Cma06g00658 578 MobiDBLite consensus disorder prediction 546 566 - -
Cma06g00658 578 PANTHER WRKY TRANSCRIPTION FACTOR 20 ISOFORM X1-RELATED 18 553 - -
Cma06g00658 578 SMART WRKY_cls 397 456 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 SMART WRKY_cls 221 279 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma06g00658 578 MobiDBLite consensus disorder prediction 1 27 - -
Cma06g00658 578 Gene3D WRKY domain 211 281 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00658 Cma-Chr6:3263898 Cma16g00995 Cma-Chr16:7656778 1.97E-95 dispersed
Cma11g01284 Cma-Chr11:8583212 Cma06g00658 Cma-Chr6:3263898 3.60E-16 transposed
Cma16g00943 Cma-Chr16:7269003 Cma06g00658 Cma-Chr6:3263898 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35194 PF03106 WRKY 3.30E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00658 - - bhj:120090463 1023.08