Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00674 ATGACTGGCTCTACCTGTGCCTCGATCGCTGCCACCAACAATGGAAAGAGCCAACAATGCATTGTGCGGGAGCAGGACCAATACATGCCAATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCCGATGATGCAAAGGAGACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGCGAGGCCAATGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTGACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTTTTTCTCAACCGCTACCGCGAGTTGGAGAGTGATCGAATCCGTACGGAACCAATCCTAAGGCGCAATGTGGATTATGGACCACAAGTAGGGATGGTGCCACCATATGGCCAGACGTTTCAGATAGGGCACGTCCCAACAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA 537 51.02 MTGSTCASIAATNNGKSQQCIVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRELESDRIRTEPILRRNVDYGPQVGMVPPYGQTFQIGHVPTGMFDAMGGYYDGGGNGGSSSGNGSQL 178
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3371316 3371852 + CmaCh06G006740.1 Cma06g00674 296228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00674 178 SUPERFAMILY Histone-fold 25 118 IPR009072 GO:0046982
Cma06g00674 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 5 157 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma06g00674 178 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-9 5 157 - -
Cma06g00674 178 Gene3D Histone, subunit A 16 129 IPR009072 GO:0046982
Cma06g00674 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 29 92 IPR003958 -
Cma06g00674 178 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma06g00674 178 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Cma06g00674 178 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Cma06g00674 178 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00674 Cma-Chr6:3371316 Cma20g00686 Cma-Chr20:3142972 1.55E-46 dispersed
Cma06g00674 Cma-Chr6:3371316 Cma06g00678 Cma-Chr6:3385698 2.65E-43 proximal
Cma16g00962 Cma-Chr16:7443314 Cma06g00674 Cma-Chr6:3371316 5.42E-99 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35196 PF00808 CBFD_NFYB_HMF 1.70E-25 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00674 K08065 - csv:116402762 287.73