Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00678 ATGGCGGACTCCGACAACGACTCCGCCGGCGGCAACCAGAAATCACCGTCGCCGCGGGAGCACGACAGACTCCTTCCGATCGCGAACGTCAGCCGGATTATGAAGAAGGCCCTCCCAGGGAACGCGAAAATCTCAAAGGAAGCGAAAGAGACCGTCCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACAGGCGAGGCCTCCGACAAGTGCCATAAGGAGAAGCGAAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCGACGTTAGGGTTCGAAGATTACGTCGATCCTCTCAAGGTTTACCTCCAGCGTTTTCGAGAAATTGAAGGCGAGAAGACTACGCTCGCCTCACGCGACGGCGGTAGTGGTAGCGCTGCCGCTTCTACAGCTGCGAATAGTACGTATTTTGACGGCGGCGCTGAATTTGGTGGTGGGATGGGAACGATGATGACGATGAATATGCCTCCAAATGTTTATGGTTCTAATGGGCCGCGTTGGAATGGGCCTGCGTTTAATTCTACGAGTCGGCCCAACTAG 543 54.7 MADSDNDSAGGNQKSPSPREHDRLLPIANVSRIMKKALPGNAKISKEAKETVQECVSEFISFITGEASDKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKVYLQRFREIEGEKTTLASRDGGSGSAAASTAANSTYFDGGAEFGGGMGTMMTMNMPPNVYGSNGPRWNGPAFNSTSRPN 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3385698 3386240 - CmaCh06G006780.1 Cma06g00678 296232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00678 180 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Cma06g00678 180 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Cma06g00678 180 MobiDBLite consensus disorder prediction 1 15 - -
Cma06g00678 180 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Cma06g00678 180 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Cma06g00678 180 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Cma06g00678 180 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Cma06g00678 180 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2 1 159 - -
Cma06g00678 180 Gene3D Histone, subunit A 11 137 IPR009072 GO:0046982
Cma06g00678 180 SUPERFAMILY Histone-fold 22 127 IPR009072 GO:0046982
Cma06g00678 180 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00234 Cma-Chr2:1048906 Cma06g00678 Cma-Chr6:3385698 9.49E-66 dispersed
Cma06g00678 Cma-Chr6:3385698 Cma16g00965 Cma-Chr16:7456100 1.03E-86 dispersed
Cma06g00674 Cma-Chr6:3371316 Cma06g00678 Cma-Chr6:3385698 2.65E-43 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35197 PF00808 CBFD_NFYB_HMF 1.50E-27 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00678 K08065 - csv:101204640 284.648