Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00682 ATGGGTTCCACGGCGAAGGAACAGTCAACCATAGCTTTCTCCAACTCCGACGACGGCCAAGAACAACAACACTACTCCTACGCTGCACAATTGGTTACCATATCAGTTCTGCCGATGACACTCCAAGCAGCCTTCGAGCTCGGCTTGTTTGAGATCTTGGCCAAGGCAGGCGATGGGGCTGAGCTGTCTCCAACTGAGATAGCCGCTAAGATAACCACCTCGAACCCGGATGCTGCGTCGATGATCGATCGGATCCTGAGGCTTCTGGCGGCCCACTCAGTGGTGGGGTGCTCTGTGATCATTGATGAAAATGGGAATCAGCAGAGATTGTATAGCCTTAAGCCGGTGGCTAAGTATTTTGTTCCTAATGAAGATGGCGTGTCGTTGGGTCCTATTATATCGATGATCCAAGATAAAGTCTTTCTTCATAGCTGGAGTGAGCTCAAGAATGCTGTGATTGAAGGAGGAGTTCCATTCAACAGAGCTCATGGGGGAGTTCATGCCTTTGAATACCCTCGCTTGGATCAAAGATTTAACCAAGTTTTCAACAACGCAATGATAAACTACTCCACTACGGCCATCAAGGCCGTTGTCAAGTGCTACAACGGTTTTGCAAGCCTCAAGCAATTGGTTGATGTTGGTGGTGGCCTCGGGGTCACTCTTAAAATCATCACGTCTGCATACCCTTCAATCAAAGGCATCAACTTTGATTTGCCTCATGTCATTCAAGATGCACCTTCCTATCCAGGTGTGGAACATGTAGGAGGAGACATGTTTGAGAAAGTTCCTGAGGGAGATGCTATTTTCATAAAGTGGATACTTCATGATTGGAGTGACGAACATTGCGAGAAGCTGTTGAAAAATTGCTACGCCGCGATCCCAGACGACGGAAAGGTAATCGTGATGGAGGGAGTGCTTCCAACGGTGCCTGAGACCTCAGATGTAGCTAAAGGCATCATCCAAGGTGATGTGCTTATGATGACTCAAAACCCAGGAGGAAAGGAGCGAACTCGTGATGAGTTTGAAGCCCTCGCAACCAAAGCGGGCTTTAAACACGTCAAATTCGTCTGTTTCCTAAGCAATCACTGGATCATAGAGTTCTTGAAATGA 1110 47.66 MGSTAKEQSTIAFSNSDDGQEQQHYSYAAQLVTISVLPMTLQAAFELGLFEILAKAGDGAELSPTEIAAKITTSNPDAASMIDRILRLLAAHSVVGCSVIIDENGNQQRLYSLKPVAKYFVPNEDGVSLGPIISMIQDKVFLHSWSELKNAVIEGGVPFNRAHGGVHAFEYPRLDQRFNQVFNNAMINYSTTAIKAVVKCYNGFASLKQLVDVGGGLGVTLKIITSAYPSIKGINFDLPHVIQDAPSYPGVEHVGGDMFEKVPEGDAIFIKWILHDWSDEHCEKLLKNCYAAIPDDGKVIVMEGVLPTVPETSDVAKGIIQGDVLMMTQNPGGKERTRDEFEALATKAGFKHVKFVCFLSNHWIIEFLK 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3407424 3409169 + CmaCh06G006820.1 Cma06g00682 296236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00682 369 PIRSF O-mtase 5 369 IPR016461 GO:0008168
Cma06g00682 369 Gene3D Vaccinia Virus protein VP39 122 369 IPR029063 -
Cma06g00682 369 Gene3D - 3 120 IPR036388 -
Cma06g00682 369 PANTHER CAFFEIC ACID O-METHYLTRANSFERASE 22 369 - -
Cma06g00682 369 Pfam O-methyltransferase domain 145 351 IPR001077 GO:0008171
Cma06g00682 369 SUPERFAMILY Winged helix DNA-binding domain 20 124 IPR036390 -
Cma06g00682 369 PANTHER O-METHYLTRANSFERASE 22 369 IPR016461 GO:0008168
Cma06g00682 369 Pfam Dimerisation domain 39 90 IPR012967 GO:0046983
Cma06g00682 369 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 369 IPR016461 GO:0008168
Cma06g00682 369 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 125 367 IPR029063 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00682 Cma-Chr6:3407424 Cma18g01342 Cma-Chr18:10209866 4.64E-142 dispersed
Cma06g00682 Cma-Chr6:3407424 Cma06g00684 Cma-Chr6:3411459 1.68E-37 proximal
Cma06g00681 Cma-Chr6:3403727 Cma06g00682 Cma-Chr6:3407424 3.98E-54 tandem
Cma06g00682 Cma-Chr6:3407424 Cma06g00683 Cma-Chr6:3410624 4.53E-41 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00682 K13066 - csv:101214916 556.984