Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma06g00684 ATGGAGGAGTTCATGCCTTTGAATACCCTCGCTTGGATCAAAGATTTAATAAAGTTTTCTAACAACAGAATGATAAATCACACCACCATGATCATCAAGATAGTTGTCGAGTCCTACAACGGCTTTGCTAACCTCAAGCAACTAGTTGATGTTGGTGGTGGCCTCGGAGTGACCCTTAAAATCATCACCTCCGCATACCCTTCAATCAAAGGTATCAACTTCGACTTGCCTCATGTCATTGAAGATGCACCATCCTATCCAGAACACGTGGGAGGAGACATGTTTGAGAAAGTTTCATATTCTGATCTCGAGAATGGTATGATATTCCCCAATTTGAGTATAACTTCTGATGGCTTTACTCTCGGCTTCCCAGTTTATCGCTCTATCATCATAAAGCTTCATCGGATTTCTTTACACGTCGTAGCATTTTTGCGCTCTGGAACGTCGATTCTTCACGAGATTCTTGCTAACCTGAGTTCGCTTCAACTCTTCTCACTCTTTTTGTTTCACTTTTATCCGCTAATTACGCTGTTGCTTTCTTCGGCCTCGAATTTCAGTTCGTATTTGTTTTCTTTTGCTTGGATCGAGAGCAGAGGACTGGTGAATTCGAGGATTAGTTCTGGAAGGTTTCAAGTTGGTACGAGAATGTCGGAGAGTTTTGCTTACAAGAGCGTGAAGATTGTAATCTTCTCAAATAAACTCAACTTCCTTATGTCTTTTGGGCCGCTAGCAATTCTTGTGGATAAGTTGACTGGACACAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCGTTCGCTGAGCGGTTAGGTTATGCGACAGAGCAGCTGGCTTTTTACACTGGGCCTACAGTTGGCGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTCATCATATCAATTTTTGCACTGAAAAATCAAATGATACGTGTTGTTCAGCTATCCTTGCTAGGCTCAATTCTGTCGAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGCTTGTTTTCAACAAAAAGGAACAGACTTTTAACAAGGCAGCTGCTGGTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTTCTTTTTCCTGTTCTTCTCAACTACACCCACAGTGAAGCCCATTTTGGGAAGTCGGAATTGGCACTTTCTAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTTCAGTTAAAAAGTCAGAGGAATAATTATTCTTCCGTTTATGAGGAAGAAACTCGGAGTGAAGAAATCTCAGATGAAGATGAAGCTCCTGAGATCACCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACTGCCTGTATCTCTGTTCTATCAGAATACTTGGTCGATGCAATCGAAGTTGCATCTGAATCATTGAAAATCCCAGTGTCGTTTATTAGTGTTATACTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGTGCTGTTATTTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACCCAGATATCTATGTTCGGGGTTCCCTTCTGTGTGGTAATTGGGTGGATTATGGGACAACCAATGGACTTGAACTTTAAACTCTTCGAGACAGCTACACTTTTTATAACTGTAATAGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTGGCAGCTAGTTTTTTCGTGCACGTTGATCCTCCTTCCCCCGAGGGCAAACTGGAGAGTTTGAAAGCGTAG 1818 41.86 MEEFMPLNTLAWIKDLIKFSNNRMINHTTMIIKIVVESYNGFANLKQLVDVGGGLGVTLKIITSAYPSIKGINFDLPHVIEDAPSYPEHVGGDMFEKVSYSDLENGMIFPNLSITSDGFTLGFPVYRSIIIKLHRISLHVVAFLRSGTSILHEILANLSSLQLFSLFLFHFYPLITLLLSSASNFSSYLFSFAWIESRGLVNSRISSGRFQVGTRMSESFAYKSVKIVIFSNKLNFLMSFGPLAILVDKLTGHNSWVFFLSLLGIIPFAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKNQMIRVVQLSLLGSILSNMLLVLGCAFFCGGLVFNKKEQTFNKAAAGVNSGLLLMAVMGLLFPVLLNYTHSEAHFGKSELALSRFSSCIMLLAYAAYLFFQLKSQRNNYSSVYEEETRSEEISDEDEAPEITKWESVIWLSILTACISVLSEYLVDAIEVASESLKIPVSFISVILLPIVGNAAEHASAVIFAMKDKLDISLGVAIGSSTQISMFGVPFCVVIGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPSPEGKLESLKA 605
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3411459 3417904 + CmaCh06G006840.1 Cma06g00684 296238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma06g00684 605 Gene3D - 285 432 IPR044880 -
Cma06g00684 605 Gene3D - 433 589 IPR044880 -
Cma06g00684 605 PANTHER VACUOLAR CATION/PROTON EXCHANGER 2 205 595 - -
Cma06g00684 605 Gene3D Vaccinia Virus protein VP39 22 101 IPR029063 -
Cma06g00684 605 TIGRFAM cax: calcium/proton exchanger 237 588 IPR004798 GO:0006816|GO:0015369
Cma06g00684 605 Pfam Sodium/calcium exchanger protein 446 585 IPR004837 GO:0016021|GO:0055085
Cma06g00684 605 Pfam Sodium/calcium exchanger protein 256 411 IPR004837 GO:0016021|GO:0055085
Cma06g00684 605 TIGRFAM caca2: calcium/proton exchanger 225 588 - -
Cma06g00684 605 Pfam O-methyltransferase domain 21 102 IPR001077 GO:0008171
Cma06g00684 605 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 11 97 IPR029063 -
Cma06g00684 605 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 205 595 IPR004713 GO:0006812|GO:0008324|GO:0016021
Cma06g00684 605 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 1 102 IPR016461 GO:0008168
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01235 Cma-Chr1:8895999 Cma06g00684 Cma-Chr6:3411459 8.55E-06 dispersed
Cma02g00318 Cma-Chr2:1525162 Cma06g00684 Cma-Chr6:3411459 0 dispersed
Cma03g00349 Cma-Chr3:4186538 Cma06g00684 Cma-Chr6:3411459 4.38E-120 dispersed
Cma06g00684 Cma-Chr6:3411459 Cma20g00699 Cma-Chr20:3216684 0 dispersed
Cma09g00830 Cma-Chr9:4072865 Cma06g00684 Cma-Chr6:3411459 2.20E-06 dispersed
Cma06g00682 Cma-Chr6:3407424 Cma06g00684 Cma-Chr6:3411459 1.68E-37 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma06g00684 K07300 - csv:101205761 622.083